Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01920 ATGGATGATGAAGTTGTTCAGCGAGTTTTCCATGAAGGTGGACGCGATTACTTCCAACAACAACCTTCAACTTCTTCCTCATCGATTCTTCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGATATTATTTGTTGGTAAAATCTATCCAAGAACTACGAGAGAAAAAGGATGGCCTTGTTACAGTTGGCATTGGCGGTCCGAGCGGTTCTGGTAAAACAAGCTTAACAGAAAAGGTGGCATCTGTTTTTGGCTGTACTGTTATATCAATGGAGAATTATTGTGATGGAGTTGATGAAGGGAATGTTCTGGATTCTATAGATTTTGATACCTTGATCAAGAATCTTGAGGATTTGACAAAAGGCAATGATACATTAGTTCCAGAGTTTGATTATCCGCAAAAGAGACGGGTTGGCTATAAAAAAATAATGAGTGCTTCATCTGGGGTGGTAATAGTTGATGGTACATATGCATTGCATGCAAAACTGCGGTCTTTACTGGATATTCGAGTTGCAGTGGTTGGTGGTGTTCATTTTAGCCTACTTTCTAAAGTTCGGTATGACATTGGAGATTCTTGTTCACTGGATTACCTAATAGATAGCATTTTTCCATTATTTAGGAAGCACATCGAGTCAGATCTTCATCATGCACAGATCAGAATTAACAACAGCTTTGTGTCATCGTTTAGAGAGGCAATCTACAAGGTCAAATGCAGAAGCAAGTCTTCAGATGAACATCCAGGTTCTTCCTTGCAAGGAAATCAAGCTCAAACAGATAATTTTATTGAAATGTACCTTAGACCACCTTCGGCTAGTGAAGAAGCAGGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGGTACTATTTATCCCTTGGTGACCAGAGGATTGTCGACAAACATTTCATCATCCGGCCGAAAGCTGAGTTTGAGGTTGGACGAATGACGTTGGGCGGGTTGCTGGCTCTTGGGTACATTGTTGTGGTTAGTTATAAACGCGCATCCACAACTGTCAATTATGGCAAGGTTTCAATGTCATTTGAAACTATTGATGTTCTTGGTGAGACATTCATGGTCATGAGAGGAACAGATAGGAAGACTGTTGGAACAGAAGCATTGAGGATGGGTATCAATGGACCTTGGATTACTAAATCATATCTGGAAATGATTCTTGAGAGAAAAGGTGTACCCCGGCTTAGTACACCACCACTTGTGTCTAATACAACTGTGGCTGGCAGTCAAGAAACCGTAATAGTTGCACCAAAGCCAATTCGTGTTACTGCCAATGTTGTTACTGGACTTGAGGATTTATCTCAGCCATGGACTCGATCCCCAACTAAATCAAAAACAGAACCTTTTGTGGCTACCTGGCATTTCACGTCTTCAGATTCCTCCCATCATGACAACACAGTCCTAGACCCCTCTTCTTTCAGGGACACTGTTAAGCTTGCTCCAATGCCTGATTCATATGACCTGGATAGGGGACTGCTTTTGGCAGTTCAAGCCATACAAGCTTTGTTGGAGAATAAAGGTGTCCCAGTCATTGTTGGAATTGGTGGTCCAAGTGGGTGTGGGAAGACAAGTTTGGCTCATAAAATGGCAAACATAATTGGTTGTGAAATAGTTTCCCTAGAAAGTTATTACAAAGAAGTTAAGGATTTTAAATATGATGACTTCAGCTCACTTGATTTATCTTTGCTATCAAAGAATATTGATGATATAAGAAATGGCCGAAGAACCAAAGTACCTATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGTGTCTATGCTTTGCATCCCGATATCCGAATATCCCTTGACTTGTGGATTGCTGTTGTAGGAGGTGTTCATTCACATTTAATTTCACGAGTTCAAAGGGATAAGAGTAGAGTGGGGTGTTTTATTTCCCAAAATGAGATCATGATGACAGTGTTTCCAATGTTCCAGCAGCTTATTGAACCTCATCTTGTTCATGCACATCTTAAAATTCGAAACGACTTTGACCCTGTGCTTTCTCCCGAGAGTTCACTGTTTGTATTGAAGAGTAACAAAAAAGTAGGTTATCAAGATATTCTAGCAATTCTTGATCCAGCAAAATTTTGCAGTTCAGTGCAGAAGTTTATTGATATTTATATGAGACTTCCTGGGATCCCTTCTAATGGTCAACTGACAGATAGTGATTGTATTCGGGTCAGAATATGTGAAGGCAGATTTGCATTACTGATACGTGAGCCTATCAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTAGCATTACTACGGTTGCTGGTCTTCTTAACCTTGGGTATCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATCTATCAGGATGGAAAGATTCTAATTGAGGTCGATCATCTGCAAGATGTCCCTGGTCGATACATTCAGATAAAGGGTGTTTCTAAAGATGCTGTGGCAGCAGCTGGTTCAATGCTTAAATTGGATGGTTCGTATACTACTAAGAGCTACCTTGAAATAGTTTTGGAAAGACTACCAACAATAGAGAGAAGTTCTGGTGGGATTAACTTTCAGCAATCAACAAGGCTGCTAGAGATTGTGGACTTTATTCAATCTCAGGGATGTAGCTCTTCTTCAGAATCCTCGTCAAGTAGGGTAGTCTCTCCGATTGAAGGCATTATTGAGGAGATGCAATCAAAGATTAGAAGGCTTGAAAAATGGCTTGCTATAAATACGGTTCTCTGGACATTTGTAATGTCAGCAATTGTTGGTTATTCACTTTATCAAAGGAAGCGTCAATGA 2853 0.402 MDDEVVQRVFHEGGRDYFQQQPSTSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKTSLTEKVASVFGCTVISMENYCDGVDEGNVLDSIDFDTLIKNLEDLTKGNDTLVPEFDYPQKRRVGYKKIMSASSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIESDLHHAQIRINNSFVSSFREAIYKVKCRSKSSDEHPGSSLQGNQAQTDNFIEMYLRPPSASEEAGINDWIKVRQSGIRYYLSLGDQRIVDKHFIIRPKAEFEVGRMTLGGLLALGYIVVVSYKRASTTVNYGKVSMSFETIDVLGETFMVMRGTDRKTVGTEALRMGINGPWITKSYLEMILERKGVPRLSTPPLVSNTTVAGSQETVIVAPKPIRVTANVVTGLEDLSQPWTRSPTKSKTEPFVATWHFTSSDSSHHDNTVLDPSSFRDTVKLAPMPDSYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGCGKTSLAHKMANIIGCEIVSLESYYKEVKDFKYDDFSSLDLSLLSKNIDDIRNGRRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVGYQDILAILDPAKFCSSVQKFIDIYMRLPGIPSNGQLTDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISITTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVPGRYIQIKGVSKDAVAAAGSMLKLDGSYTTKSYLEIVLERLPTIERSSGGINFQQSTRLLEIVDFIQSQGCSSSSESSSSRVVSPIEGIIEEMQSKIRRLEKWLAINTVLWTFVMSAIVGYSLYQRKRQ 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01920 950 Pfam Phosphoribulokinase / Uridine kinase family 106 202 IPR006083 GO:0005524|GO:0016301
Trre7g01920 950 Pfam Phosphoribulokinase / Uridine kinase family 517 682 IPR006083 GO:0005524|GO:0016301
Trre7g01920 950 CDD UMPK_like 62 224 - -
Trre7g01920 950 SMART AAA_5 514 658 IPR003593 GO:0016887
Trre7g01920 950 SMART AAA_5 59 209 IPR003593 GO:0016887
Trre7g01920 950 SUPERFAMILY CYTH-like phosphatases 723 857 IPR033469 -
Trre7g01920 950 Gene3D - 61 242 IPR027417 -
Trre7g01920 950 CDD UMPK_like 517 685 - -
Trre7g01920 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 685 IPR027417 -
Trre7g01920 950 Gene3D - 702 862 - -
Trre7g01920 950 PRINTS Uridine kinase signature 515 532 - -
Trre7g01920 950 PRINTS Uridine kinase signature 542 553 - -
Trre7g01920 950 PRINTS Uridine kinase signature 636 646 - -
Trre7g01920 950 PANTHER URIDINE KINASE 468 873 - -
Trre7g01920 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 172 IPR027417 -
Trre7g01920 950 Gene3D - 514 691 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01920 Trre-Chr7 15086103 15100770 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01920 510 713 PRT Gene Family AT1G55810 24.312 3.96e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01920 - - gmx:100778905 1672.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01920 7 15086103 15100770 Trre7g01920 7 15086103 15100770 ECH
Trre7g01920 7 15086103 15100770 Trre15g04341 15 54019545 54026159 PCT