Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01913 ATGGCAATTTTACCTACAAATTCATCCAGCTTGGAATTGACCATATCCATCCCAGGTTTTGCTTCTTCTTCACCAACCACTTTTCTCCCCTCATCAACCGTGAACAAATTGGACATGAATCGAGTAGCCATAGAAGAAGAATCGATGGAAGTAGAAGATGAAGAAGAAAACAGCGTAATTGGAGACACTCTTCCTCGCAAAAAACTTCGTCTCACAAAGGAACAGTCACGTCTTCTTGAAGAAAGATTCAGAACAAATCACACTTTAAACCCAAAGCAGAAAGAGAATTTGGCAATGCAGCTGAAGCTCCGACCAAGGCAAGTGGAGGTTTGGTTTCAAAACCGCAGGGCCAGGAGCAAGTTGAAGCAAACAGAGATGGAGTGTGAGTACTTAAAGAGATGGTTTGGGACTCTGACAGAACAGAACAAAAGATTACAAAAAGAAGTTGAAGAACTCAGAGCTATGAAAGTGGGTCCACCAACTGTGTTATCTCCTCACAGCTACGAACCACTTCCAGCTTCAACACTATCTATGTGTCCACGATGTGAGCGTGTCACCACCAACACCGCCGTCACTTTGTCTCCTAAAGTGTCCGCGCCTGTCCTGCATTCGCGTCAAATATGA 624 0.4423 MAILPTNSSSLELTISIPGFASSSPTTFLPSSTVNKLDMNRVAIEEESMEVEDEEENSVIGDTLPRKKLRLTKEQSRLLEERFRTNHTLNPKQKENLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGTLTEQNKRLQKEVEELRAMKVGPPTVLSPHSYEPLPASTLSMCPRCERVTTNTAVTLSPKVSAPVLHSRQI 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01913 207 Gene3D - 72 118 - -
Trre7g01913 207 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Trre7g01913 207 SUPERFAMILY Homeodomain-like 59 123 IPR009057 -
Trre7g01913 207 SMART HOX_1 64 126 IPR001356 GO:0003677
Trre7g01913 207 Coils Coil 135 155 - -
Trre7g01913 207 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 31 193 - -
Trre7g01913 207 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Trre7g01913 207 Pfam Homeodomain 66 120 IPR001356 GO:0003677
Trre7g01913 207 FunFam Homeobox-leucine zipper protein 18 47 127 - -
Trre7g01913 207 Pfam Homeobox associated leucine zipper 122 156 IPR003106 GO:0006355|GO:0043565
Trre7g01913 207 CDD homeodomain 65 123 IPR001356 GO:0003677
Trre7g01913 207 SMART halz 122 165 IPR003106 GO:0006355|GO:0043565
Trre7g01913 207 Coils Coil 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01913 Trre-Chr7 15053318 15057719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01913 66 186 Homeobox Transcription Factor Family AT1G70920 71.074 1.18e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre7g01913 Homeodomain 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01913 K09338 - gmx:100775341 290.041