Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01906 ATGTCTTCAAATGAGATCACACAAATGGAAGAAGGTGATCTTAAGGCACAAGCACATGCACAAAGGGATTCTGGATTTTGTGGCTCTCCTGAAGTAGTTCAAATCATACAAAAGGTAATAGCAGAGGTGATAGGAACATACTTCTTAATATTTGCAGTTATGATATTGGTTTATTCTCTCGGTCACATTTCCGGTGCTCATTTCAATCCTGCAGTTACAGTGCCATTGTATCTTGTTGCACAGGTGGTAGGATCTGTTCTTGCCAGTGGAACATTGTACCTTTTATTTGATGTAGATGAAGAAACTTTTTTCGGAACAACGCCAGCAGGATCTAATATGCAATCTCTTGTGTTTGAGATACTTACATCATTTCTTTTGATGTTTGTTGTATCTGCAGTTTCCACAGACAATAGAGCTATTGGAGAATTGGCAGGGATTGCAGTTGGTATGACAATTGTGGTAGATGTCTTCATTGCAGGGCCTGTGTCAGGTGCATCTATGAATCCAGCTAGAACTCTTGGGCCTGCAGTGGTGATGCATATTTACAAAGGATTTTGGGTTTATGTTCTTGGACCTTTTATTGGTGCCATATTAGGTGCCTCAGCTTACAACTTGATTAGATTCACAGACAAACCACTTAGGGAATTAAGCCAAAGTGCAAGCTTCCTCAGAAAAGGAAGCTTTCGGTAG 690 0.4029 MSSNEITQMEEGDLKAQAHAQRDSGFCGSPEVVQIIQKVIAEVIGTYFLIFAVMILVYSLGHISGAHFNPAVTVPLYLVAQVVGSVLASGTLYLLFDVDEETFFGTTPAGSNMQSLVFEILTSFLLMFVVSAVSTDNRAIGELAGIAVGMTIVVDVFIAGPVSGASMNPARTLGPAVVMHIYKGFWVYVLGPFIGAILGASAYNLIRFTDKPLRELSQSASFLRKGSFR 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01906 229 Pfam Major intrinsic protein 51 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g01906 229 PRINTS Major intrinsic protein family signature 49 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g01906 229 PRINTS Major intrinsic protein family signature 149 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g01906 229 PRINTS Major intrinsic protein family signature 186 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g01906 229 PRINTS Major intrinsic protein family signature 118 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g01906 229 PANTHER AQUAPORIN NIP2-1 52 222 IPR034294 -
Trre7g01906 229 SUPERFAMILY Aquaporin-like 34 216 IPR023271 -
Trre7g01906 229 Gene3D Glycerol uptake facilitator protein. 2 220 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01906 Trre-Chr7 14988558 14990264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01906 1 224 Major Intrinsic Protein MIP AT5G37820 52.652 2.43e-92 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01906 K09874 - aew:130768857 300.827