Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01889 ATGGCCGGCGAGTTCGCCGGAGATAACACACCGGAGCTACTTTCTCTTGTTCACGATATCACCGGAATGTGTGTCGGAGGAGGAGGTTCTTCTTCCCTCCCCACCGATGCAATGTTCAGGAAAGATTGCACCGATCTAGTTCGCCGGATCTCTCTTCTATCTCATTTGTTTGAGGAAATTAAGGAACTGAATAAGATTAAAGGTTCTCCTTCAAGTTCTTCATCTATTGCCTTAGAGGATTCGTGGTCCTCTGATCTAGTTCTTGCTCTTCAATCTGCTAAACGGTTATTATCCATAGCGAAGGATTTCAGTTCTAATTCTGATAATTCTTCTGATGGAGCTGCCAAGAATATTATCTTCCAATTTCAGTGCGTGACGTGGAAACTGGAAAAACTATTGAGCAGTTTACCGTATGACGATTTAGATATCTCGGTGGAAGTCAAAGAACAGGTGGATTTGGTGAGAACACAATTGAGACGGGCCACGGATAAATACGGGTTTATGATTTCCAAGATGCCGTCTTATGATTTATCTCAGCCCTTGGCTCAAGAAATTAATCAAGTTCTTGGCAAATCTGTGAGTGGGATGCATAAACAACACAGTTGTCCTGAGAATCTATCAGAACTAGGCAGCATTCCTAAAAGCAATGAAGGGAAAAGCTGCAGCCCACGTGGGGCAGGATCTCGATTGGAAAGAACAAGGAGCATCCATGCCTCTTCTGAGGTTTCCTTATCGATTTTAACTGCGCCTAAAAGTCAAGAAATTTCTGGGAGCACGAAGATACCTGTAGATAAAAAACCTGAAGCAATTGTAATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGAGATCCTGTTATTGTAGCCACTGGTCAGACATATGAGAGATCTTACATACAGAGATGGATTGATTGTGGAAATACAACCTGTCCAAAAACTCAGCAGAAGCTCCAACATTTGACCCTTACACCAAATTATGTTCTAAGGAGCCTTGTTTCTCAGTGGTGTATAGAGCACAACATCGAACAACCAACAGGACTAACCAATGGAAAAATAAAAAAGAGTGATGGATCATTCAGAGATGTTACAGGTGACATAGCGGCAATTGAAACTCTAGTCCGGAAGCTCTCCTGCAGGTCCATTGAGGAGTGTAGAGCAGCTGTTGCTGAAATTCGTTTATTATCCAAAAGAAGCACTGACAACAGGATACTAATTGCTGAAGCTGGAGCGATACCAGTTCTAGTCAACCTTTTAACTTCAGAAGATGAAATGACACAAGAAAATGCGGTTACTTCAATTCTCAATCTCTCTATATATGAAAACAACAAAGGACTTATAATGCTTGCTGGTGCAATTCCATCCATTGTCCAAGTTCTCCGAGCTGGAACCATGGAAGCAAGAGAAAATGCGGCAGCAACGCTTTTTAGCTTGTCACTTGCAGATGAGAACAAAATTATAATTGGAGCCTCAGGAGCTATATCCGCTTTGGTAGAATTGCTCCAAAATGGAAGCCCTAGAGGGAAGAAGGACGCAGCAACAGCACTGTTCAATTTATGCATATATCAAGGGAACAAGGGCAGAGCCATAAGAGCAGGGATCATCACAGCACTGTTGAAAATGCTGACAGATTCAAGCAAATCAATGGTTGACGAAGCCCTTACAATTATGTCAGTTCTTGCCAGTCACCAAGAGGCAAAGGTTACCATAGTAAAAGCCAGCACTATACCAGTTTTAATAGATCTTTTGAGGACAGGGTTGCCTCGCAACAAAGAGAACGCAGCTGCCATTTTACTTGCTTTGTGCAAGAGGGATACTGATAATCTTTCCTGTATCAGTAGACTCGGTGCTGTCATACCTCTTTCTGAACTTGCTAGGACCGGTACAGAGAGAGCAAAAAGAAAGGCTACTTCACTATTGGAGCATCTTCGTAAGTTACAACAGCTTTGA 1956 0.4233 MAGEFAGDNTPELLSLVHDITGMCVGGGGSSSLPTDAMFRKDCTDLVRRISLLSHLFEEIKELNKIKGSPSSSSSIALEDSWSSDLVLALQSAKRLLSIAKDFSSNSDNSSDGAAKNIIFQFQCVTWKLEKLLSSLPYDDLDISVEVKEQVDLVRTQLRRATDKYGFMISKMPSYDLSQPLAQEINQVLGKSVSGMHKQHSCPENLSELGSIPKSNEGKSCSPRGAGSRLERTRSIHASSEVSLSILTAPKSQEISGSTKIPVDKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLVSQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIETLVRKLSCRSIEECRAAVAEIRLLSKRSTDNRILIAEAGAIPVLVNLLTSEDEMTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAISALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVTIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLSELARTGTERAKRKATSLLEHLRKLQQL 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01889 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 494 536 IPR000225 GO:0005515
Trre7g01889 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Trre7g01889 651 Gene3D - 355 449 IPR011989 -
Trre7g01889 651 SUPERFAMILY ARM repeat 371 645 IPR016024 -
Trre7g01889 651 SMART arm_5 401 441 IPR000225 GO:0005515
Trre7g01889 651 SMART arm_5 483 523 IPR000225 GO:0005515
Trre7g01889 651 SMART arm_5 524 564 IPR000225 GO:0005515
Trre7g01889 651 SMART arm_5 442 482 IPR000225 GO:0005515
Trre7g01889 651 SMART arm_5 565 605 IPR000225 GO:0005515
Trre7g01889 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 453 495 IPR000225 GO:0005515
Trre7g01889 651 FunFam RING-type E3 ubiquitin transferase 271 346 - -
Trre7g01889 651 Gene3D - 551 650 IPR011989 -
Trre7g01889 651 MobiDBLite consensus disorder prediction 208 234 - -
Trre7g01889 651 FunFam RING-type E3 ubiquitin transferase 350 550 - -
Trre7g01889 651 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Trre7g01889 651 Pfam U-box domain 272 343 IPR003613 GO:0004842|GO:0016567
Trre7g01889 651 MobiDBLite consensus disorder prediction 208 222 - -
Trre7g01889 651 Pfam Armadillo/beta-catenin-like repeat 484 522 IPR000225 GO:0005515
Trre7g01889 651 Pfam Armadillo/beta-catenin-like repeat 402 440 IPR000225 GO:0005515
Trre7g01889 651 SUPERFAMILY RING/U-box 271 346 - -
Trre7g01889 651 Coils Coil 631 651 - -
Trre7g01889 651 FunFam RING-type E3 ubiquitin transferase 551 650 - -
Trre7g01889 651 PANTHER U BOX DOMAIN-CONTAINING 38 647 - -
Trre7g01889 651 Gene3D - 450 550 IPR011989 -
Trre7g01889 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 454 IPR000225 GO:0005515
Trre7g01889 651 CDD RING-Ubox_PUB 273 325 IPR045210 -
Trre7g01889 651 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01889 Trre-Chr7 14755339 14758040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01889 13 650 U-box Gene Family AT1G23030 60.938 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01889 - - gmx:100815448 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01889 7 14755339 14758040 Trre7g01889 7 14755339 14758040 ECH