Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01857 ATGCAAGGTCAAAGGAGGACTATTGGGTCCTTCCCGGCAATTGTTAGCATGATGCAAGGGCCTAGTTCGAGTGGCACCGATACTAATCACCAGTCTTCCTTGAATCATTTGCAAAATTCAGTTGATTTCCGGTTGTCAGATTATAGGGGGTCTTCTGGTGAGACTGCGTGTTTACGTGGTACCGGTCCTAATGTGAACTTTAGTGGCTGGAATACTGGTGAACCCAATTCTGGACTGAATCTGATTGACCAAGTCGAAGACGAAGATCTAATATCAGAACATAGGTTGTCTTCTTCATATGGTGCTACTTCTGAGGATGGTGTAAGACCTGAGGAAGGGCAATTACCTGGGAACCAATCCAGAATCCACCCTTCCTTTTTGCAAGGTTCCAGCTCCAATCATACAGCCCAGAGTATTAATCTCGGTATGGGGCACATTTCGAACTCTTCTGATCGCGGTAAAGGAAAAGAAACTAGTAGTGGTGTTAATAACCACAATCATTGTGAATTAGATATAGAGAAGACATCACTTGGCAGTTCTTCATTTAATCATACAGGAACTCCGTCTGCAATGGCTTGGGGAGATAGTGGTAGTTCAAGTTCTTCTTTAGCTAATTGGGGTCCTTCTTGCAAAAGAAAGACCCTTGAAGGAAGTTCTATGCAACTGTGTACTGGAGGAAGCTCGAGTTCCCTTGTACAATCTGGAAATGGTTACTGGCTTACTGATTCTGTTGATCTTAATGCTCCTGGAAGCTTAGGTGATTTGTCACCTTTAGAGGATTTTCGTGTTACTAGTCCTCCATTTCAGCAGAGTACAAGAAATGAAGTGAGACAAGAAGCTTCAACTATGTTTCCTTCTATGATAAGTATTGCGGAAAATGTGGAAAGGCCTCTAAGAAACTTTGATAGGAGAATAACCCATCTACAGCATCCGGAATCTGTACCTCTTAATTTAACATCAACAGGGAGTACTAGACATCATAACCACCCTTCTCCGCATCAAATACCTGGCTCTTTCTCATTTAACGAGTCCTTGGATTTGAGGTTAACAGCTGGAGCAACAGCTGCCAATTCTGCTGTGCCTCAAAACCAGTCACCTGCCCTGCATATGCATCCTTTTCCGTGGAATAGAGCTGCTAATCCTAGAGTGTCCAGATCTTCAAGTTCTTATAACTCGGGAGAAAGAGCAGTACGTGAAGATTTTAATTTTAGAATCTTCCCAAGAGATAGTACCGAGCATCCCATGAACGTGCCTGCATCTTCAGGACATGAACCTGCAGGTTGGTATACATCTTCCAGTAATGTGAACAATGCTGGAGGTATGCCTCCTCCATCCTGGATTGGATCTAGTTCAAATGTCCACTCATCACCTAATCCTGGCTGGACTTTTAACCATGAAGTCCCAACAGAAAATCTACAGAGAGTTTCAGAGTTCAGTCCTTGGTCACTTTTCCCTTCAATCAGTTCAGCTTCTGGTACTCATAATGGCCATTCCTCCTCTACTTCCGGCCCTCCTTCATTTTCTCAGGGTTCTAGCAGCAATCAACCATATCCAAGAACATCATATTTGACAGAAAGAAGAGGCGGTGATGTTCTCTCTGCTCCTCATTCACTGCGAACATTACCCTCTGACAACGAGGGGAGACGCCGGCTTATATCTGAGATTCGTCAAGTCCTGATTGCAATGCGGAGGGGTGAGAACTTGCGTGCTGAGGATTATATGCTCTTTGACCCTTTCTTATATCATGGCATGGCTGAAATGCACGACAGACACAGAGAAATGCGCCTTGACGTGGATAACATGTCTTACGAGGAATTGTTGGCATTGGAGGAGCGAATAGGAGACGTAAGCACTGGACTGAGTGAAGATATGATTCATAAGTTAATGAAACAGCGATTTTACATGTCTCTCATGACAGAGTCTTCTGATCTCGAACCTTGCTGTATCTGTCAGGAGGAATATGCTGATGGACAGAGTATTGGTTTGCTAGATTGTGGGCACGAGTTCCACAGTAACTGCATCAAGCAGTGGCTAATGCAGAAGAATCTGTGCCCAATTTGCAAAACAACAGCCTTAGCTACGTGA 2085 0.4403 MQGQRRTIGSFPAIVSMMQGPSSSGTDTNHQSSLNHLQNSVDFRLSDYRGSSGETACLRGTGPNVNFSGWNTGEPNSGLNLIDQVEDEDLISEHRLSSSYGATSEDGVRPEEGQLPGNQSRIHPSFLQGSSSNHTAQSINLGMGHISNSSDRGKGKETSSGVNNHNHCELDIEKTSLGSSSFNHTGTPSAMAWGDSGSSSSSLANWGPSCKRKTLEGSSMQLCTGGSSSSLVQSGNGYWLTDSVDLNAPGSLGDLSPLEDFRVTSPPFQQSTRNEVRQEASTMFPSMISIAENVERPLRNFDRRITHLQHPESVPLNLTSTGSTRHHNHPSPHQIPGSFSFNESLDLRLTAGATAANSAVPQNQSPALHMHPFPWNRAANPRVSRSSSSYNSGERAVREDFNFRIFPRDSTEHPMNVPASSGHEPAGWYTSSSNVNNAGGMPPPSWIGSSSNVHSSPNPGWTFNHEVPTENLQRVSEFSPWSLFPSISSASGTHNGHSSSTSGPPSFSQGSSSNQPYPRTSYLTERRGGDVLSAPHSLRTLPSDNEGRRRLISEIRQVLIAMRRGENLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDMIHKLMKQRFYMSLMTESSDLEPCCICQEEYADGQSIGLLDCGHEFHSNCIKQWLMQKNLCPICKTTALAT 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01857 694 ProSiteProfiles Zinc finger RING-type profile. 647 688 IPR001841 -
Trre7g01857 694 MobiDBLite consensus disorder prediction 118 166 - -
Trre7g01857 694 FunFam E3 ubiquitin-protein ligase MBR2 615 692 - -
Trre7g01857 694 MobiDBLite consensus disorder prediction 409 465 - -
Trre7g01857 694 MobiDBLite consensus disorder prediction 98 166 - -
Trre7g01857 694 SUPERFAMILY RING/U-box 646 691 - -
Trre7g01857 694 MobiDBLite consensus disorder prediction 489 521 - -
Trre7g01857 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 692 IPR013083 -
Trre7g01857 694 Pfam Ring finger domain 647 688 IPR001841 -
Trre7g01857 694 MobiDBLite consensus disorder prediction 489 522 - -
Trre7g01857 694 MobiDBLite consensus disorder prediction 425 465 - -
Trre7g01857 694 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 164 692 IPR045191 GO:0061630
Trre7g01857 694 SMART ring_2 647 687 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01857 Trre-Chr7 14486804 14489905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01857 1 694 C3H Transcription Factor Family AT2G15530 37.062 2.97e-104 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01857 - K19041 gmx:100809024 1028.85