Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01856 ATGGCCATGAGTGTAGATCATGATCAAGGTGTTCAGTCTGATTTCATATGGGAAAATCCACCTTGGTTTGATCTCACAAATTCTGATAACTTAGGTGAGAGTAGCAAACAAAAGTTAAACATGAAATCAATGAACCCGGACGTAGAAATTAACGAAGGAGAAGCTCTTGCAAATAAGAAGCGAAAGCGAGGTGGGGCTGTGGCTAGAAGTGAGAGTAATACTACAATTGGTGAAGGAAAAGATGGAAAATATCGCGATTTTGATCATGAAATGCACATATTAACCGAGAGAGAAAGGAGAAAGAAAATGAGGAACATGTTCGCTAGCCTTCATGCTTTGCTTCCCCAGCTTCCTTCTAAGGCTGATAAATCAACCATTGTGGATGAAGCTGTGAAGCAAATAAAAAATTTACAACAAATTCTTCAAAACCTAGAAAAGAAGAAGCAAGAAAAGCTCAAATCTGTATCCCCAATTGGGACTGAGTCATCATCAGTGATCAACAACACAAAGTGGCATCCCTATGAAACAAGGGAAGCAATCTTAACTGATCAAGGGTCCTCAAGTTATAATAATAACTTGGCTACAAGTGCAATTGTAACTTCAAATCCTACCAATGCATTATCAATATCTGCACCCCCACCTCAACTAGTAGCTTTTCAAACTTGGTCTTCTCAAAATGTTGTCTTGAACATTTGTGGTGGAGAAGCACAATTTTGCATATGTGCTACTAAGAAGCCAGGTCTCTTAACAACAATTGCTTTTGTGTTTGAGAAACATAGGATTGATATTGTATCTGCCAACATTTCTTGCAATGGAAATGGTAACTTCTACATGATTATGGCTCGTGCAAAACAAGGTTCATATCAAGACACAAATTCATTGGAGGAAACTTACAAGCAAGCGGCTTCAGAAATTATGATGTGGATCTCTTAA 933 0.3816 MAMSVDHDQGVQSDFIWENPPWFDLTNSDNLGESSKQKLNMKSMNPDVEINEGEALANKKRKRGGAVARSESNTTIGEGKDGKYRDFDHEMHILTERERRKKMRNMFASLHALLPQLPSKADKSTIVDEAVKQIKNLQQILQNLEKKKQEKLKSVSPIGTESSSVINNTKWHPYETREAILTDQGSSSYNNNLATSAIVTSNPTNALSISAPPPQLVAFQTWSSQNVVLNICGGEAQFCICATKKPGLLTTIAFVFEKHRIDIVSANISCNGNGNFYMIMARAKQGSYQDTNSLEETYKQAASEIMMWIS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01856 310 CDD bHLH_AtbHLH_like 92 139 IPR045239 -
Trre7g01856 310 SMART finulus 93 143 IPR011598 GO:0046983
Trre7g01856 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 137 IPR011598 GO:0046983
Trre7g01856 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 157 IPR036638 GO:0046983
Trre7g01856 310 CDD ACT 245 280 - -
Trre7g01856 310 MobiDBLite consensus disorder prediction 59 83 - -
Trre7g01856 310 Gene3D - 82 154 IPR036638 GO:0046983
Trre7g01856 310 Pfam Helix-loop-helix DNA-binding domain 90 138 IPR011598 GO:0046983
Trre7g01856 310 Coils Coil 127 154 - -
Trre7g01856 310 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 34 309 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01856 Trre-Chr7 14476842 14479251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01856 12 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.604 5.72e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre7g01856 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01856 - - psat:127104597 389.423