Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01850 ATGGTTATCACATCAGGCAAGAAAAGAATGGGAAGTGAAAGAGAACAAGTTATATATAATATAACCCACCGACCTAACCCAATTCTTGTCCTAAATCTTGTGTTTCTTCAAAATTACACCCAACCAACAACAAGAACACCACCTCAATCACGGATTCACGCCTCTGCACCATCATCGGATTTGTTTCCTCATAATAATCACCTCAATAATTCTCCATTTACTCCCACTAATTATTGGAAGTTGTGGTGTTGTAGTACATTGATGGCTAACTCAGGTAACAAATCTACGGCAACAATGTCGTTGGATTCCATGGAACAGAAGGGGAAAAATATTTCTGAATCAAATGCAAGCATAATTCAATGTCCTATAAGCCAGCAATGCCGTAGCTCCTTAGATGGTCCGGTATCTATCCTTTGGGATATTGAAAATTGTCCTGTTCCAAGTGATGTACGCCCAGAAGATGTGGCGGGTAATATAAGAATGGCTCTGCAGGTGCACCCTGTAATTACAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAATGCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTTATTGATGTTCCCAATGGGAGAAAAGACGCTGCCGACAAAGCAATCTTGGTCGACATGTTCTTATTTGCTCTTGACAATCCCCCACCATCCTCTATCATGCTAATCTCTGGAGACGTTGATTTTGCTCCAGCGCTACACATTCTTGGTCAGCGGGGATACACTATAATTCTTGTCATCCCTGCTGGGGTTGGTGTTTCTTCTGCCCTATGCAATGCTGGTAAATTTGTCTGGGACTGGTCTGTTGTGGCTCGTGGAGAAGGTTTCGTCCCCCCCTCAAAGGCTTTGGCGCCACCCCGTGGAGGTTCAGTTGAGCTTTCTGGATATTTGATGGGATGCCATATCAATGACAGCACTGATGGACAAAATGAAGAAGCAATAGTTTATAGAGGGATGTCACAGAGCTATTACAACTCAAGGGAATACTCAGTGGTATCACAATCTCTGTCTGAATATAACTCACCGCACGTGTCTTACTTACCAACATCTCTGAGATCATATAGCCTTCCATCTGGATTGAATGATGTTGCTGGAGGACCTGTCCCTTCTAGCGACAATACTGAATGCCAGATATGGGTACAGCCTGGGGATTTAAATGGTCTCAAGGGTCAGATAATAAGGTTACTCGAACTTTCTGGAGGATGCCTGCCCTTGGTCCGAGTACCAGCAGAGTACCAGAAAATATTTGGTAAGCCACTCTTTATATCTGAATATGGGGCATTTAAGTTGGTTGATCTTTTCAAAAAAATGGGCGATGCCATTTCTGTGGAAGGGAAAGGGGCTCGCAGACTTGTGTATCTCAGAAACAGGAAGGGAGGATCAGGTGCTCCTCCGCTGTCTCTTGCCAAGAAAGATAAGAAAGGAAAAAGGGCACTGGAAGAAAATGCAAATGTTGTCATTGGTGGCTGCTCTTCGGATGAGTTGTCAGATGAAGAAAGAGTAGTCATAGAAGAACGCGAGGAAATAAGTTTTAATGGAAAGTGTAATAAGGGTAGAGCAGCCAGATGTGAAATTGATGGCCGTGTTCTTGAGCAGTTTAAGTGTGAGCTGCAGGAGATTCTGGTCAGCTATTCCTGTTGGATACGTCTAAGTTGTTTTGAAGCTGTATACCAGCAACGGTACAAGAAACAATTGGAATATCAGATATTTGGCGTGGACAAGTTGGAGGACTTGTTGGGGAAAGTGAGTGATGTGGTAGTATTGCACGAGGAACCAGTAAGCAAAAGGAAATTCCTGGCTGCTGTTGGTAGTTAA 1851 0.436 MVITSGKKRMGSEREQVIYNITHRPNPILVLNLVFLQNYTQPTTRTPPQSRIHASAPSSDLFPHNNHLNNSPFTPTNYWKLWCCSTLMANSGNKSTATMSLDSMEQKGKNISESNASIIQCPISQQCRSSLDGPVSILWDIENCPVPSDVRPEDVAGNIRMALQVHPVITGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTIILVIPAGVGVSSALCNAGKFVWDWSVVARGEGFVPPSKALAPPRGGSVELSGYLMGCHINDSTDGQNEEAIVYRGMSQSYYNSREYSVVSQSLSEYNSPHVSYLPTSLRSYSLPSGLNDVAGGPVPSSDNTECQIWVQPGDLNGLKGQIIRLLELSGGCLPLVRVPAEYQKIFGKPLFISEYGAFKLVDLFKKMGDAISVEGKGARRLVYLRNRKGGSGAPPLSLAKKDKKGKRALEENANVVIGGCSSDELSDEERVVIEEREEISFNGKCNKGRAARCEIDGRVLEQFKCELQEILVSYSCWIRLSCFEAVYQQRYKKQLEYQIFGVDKLEDLLGKVSDVVVLHEEPVSKRKFLAAVGS 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01850 616 ProSiteProfiles OST-type HTH domain profile. 396 470 IPR025605 -
Trre7g01850 616 ProSiteProfiles OST-type HTH domain profile. 541 615 IPR025605 -
Trre7g01850 616 CDD LOTUS 542 604 - -
Trre7g01850 616 PANTHER LIMKAIN B LKAP 121 551 IPR024768 GO:0005777|GO:0010468
Trre7g01850 616 Gene3D - 396 465 IPR041966 -
Trre7g01850 616 Gene3D - 538 608 IPR041966 -
Trre7g01850 616 Pfam OST-HTH/LOTUS domain 398 464 IPR025605 -
Trre7g01850 616 Pfam OST-HTH/LOTUS domain 541 604 IPR025605 -
Trre7g01850 616 CDD PIN_limkain_b1_N_like 134 260 - -
Trre7g01850 616 CDD LOTUS 397 466 - -
Trre7g01850 616 Pfam NYN domain 135 274 IPR021139 GO:0004540
Trre7g01850 616 Gene3D - 135 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01850 Trre-Chr7 14396039 14399475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01850 131 285 C2H2 Transcription Factor Family AT5G61190 43.871 1.01e-29 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01850 - - gmx:100818186 850.506