Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01827 ATGAACAACTACTCTTATTCCTCTTTCTCTCCTACCTCACTCACCTCCGATCAAGAACTCTCCGTCATCGTTGCCGCTTTAACAAACGTCGTCACCGGTTCAACTTCAACAGATTTTCATCTTCCTAATTCTACCGTTGGTGCTACCAGTAGCAGCACCTTAGAACGAATAGTTCCACCGGTAAACATGGAAACTTGCCGTGAATGTAACATAGCAGGATGTTTGGGATGCAATTTCTTCCCTGAAGAGAATAAGAAAAAACAAAAGAGAGCTAAGAAGAAATACAGAGGAGTTAGACAGAGACCATGGGGGAAATGGGCAGCAGAGATTCGCGATCCGAGACGCGCAACTCGTGTTTGGTTAGGAACATTTACAACTGCTGAAGAAGCTGCTAGAGCTTATGATAATGCCGCGATCGAGTTTCGTGGACCGAGGGCTAAGCTTAATTTTCCTCTTGTTGATGAGTCTCTTAAGCATGCAGAAGAGGAGCCAGAAATGGTTGTTGTTGATGATACTTCTGAGAATTTGAATCAGGAAATGCAAACAGAGACAAATGCTGGATTTGGGAATAATACTAATAATAACAATAATGATTTTTGGGATAGGATTGGGGAAGCTGATTTTCAACAACTTATGAGGTTTATGGATTTTGGTGGAGATTCTTCTGGTTCAAGAACAGGGAACGCTTTTAATTAG 696 0.4181 MNNYSYSSFSPTSLTSDQELSVIVAALTNVVTGSTSTDFHLPNSTVGATSSSTLERIVPPVNMETCRECNIAGCLGCNFFPEENKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFTTAEEAARAYDNAAIEFRGPRAKLNFPLVDESLKHAEEEPEMVVVDDTSENLNQEMQTETNAGFGNNTNNNNNDFWDRIGEADFQQLMRFMDFGGDSSGSRTGNAFN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01827 231 Gene3D AP2/ERF domain 93 153 IPR036955 GO:0003700|GO:0006355
Trre7g01827 231 CDD AP2 95 151 IPR001471 GO:0003700|GO:0006355
Trre7g01827 231 SMART rav1_2 94 157 IPR001471 GO:0003700|GO:0006355
Trre7g01827 231 ProSiteProfiles AP2/ERF domain profile. 94 151 IPR001471 GO:0003700|GO:0006355
Trre7g01827 231 PANTHER DNA-BINDING DOMAIN 62 179 IPR044808 GO:0003700|GO:0009873
Trre7g01827 231 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Trre7g01827 231 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Trre7g01827 231 FunFam Ethylene-responsive transcription factor 2 93 152 - -
Trre7g01827 231 Pfam AP2 domain 94 143 IPR001471 GO:0003700|GO:0006355
Trre7g01827 231 SUPERFAMILY DNA-binding domain 94 152 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01827 Trre-Chr7 14199308 14200003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01827 14 154 AP2-EREBP Transcription Factor Family AT4G34410 47.458 1.70e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre7g01827 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01827 - - psat:127106187 310.457