Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01788 ATGGGGGGTTGCACTTCAAAGCCACAGAAACCAAACCCATATGCACTTAGAGAAACAGAAACTGACCCAACACAAATCCCAAAGACCCCACTAAGTCCCGCCGGAGAAAACCACCGTCGGAAAGATGACGTCATCGCCGGAAAAAAGTCTCCTTTTTTTCCTTTTTACAGTCCAAGTCCAGCTCGCTTCTTTAAGAAGTCTCCGTCGACGACTCCTAGCCGGAGTACTAGCTCAACGCCGAGGAGGTTTTTCCGGCGAGCTTTTCCTCCACCTTCTCCGGCGAAACATATAAGGGCTGTGTTGGCTAGGAGACAAGGGAAGAAGGAAACTGCGGCGGCGATACCGGAAGATTCAGAGGAGGGTGGTGGTGATTTGGACAAGAGATTTGGATTCTCAAAGGATTTTAGTAGTAGGTTGGAGGTTGGAGAAGAAGTGGGTAGGGGGCATTTTGGGTATACTTGTTCTGCTAAGTTCAAGAAGGGTGAGTTTAAGGGTCAACAAGTGGCTGTAAAAGTTATCCCTAAAGCAAAGATGACAACAGCTATTGCAATTGAAGATGTTAGAAGAGAGGTGAAAATATTGCGAGCTTTGAACGGGCATAGCAATTTAGTACAATTTTATGATGCATTTGAAGATCAAGAAAACGTCTACATTGTAATGGAGTTATGTGAAGGGGGAGAGCTATTAGATATGATACTATCAAGAGGAGGGAAATATACAGAAGATGATGCAAAGGCTGTCATGGTACAAATACTAAATGTCGTTGCATTTTGTCATCTTCAGGGTGTAGTGCACCGAGATCTTAAACCTGAGAATTTTTTGTACACTTCAAAGGATGAAAGTTCCGAGTTAAAAGCTATAGACTTTGGATTATCAGATTTTGTCAGACCAGATGAAAGGCTTAATGACATTGTTGGAAGTGCATATTATGTGGCTCCTGAAGTTCTTCATAGATCTTACAGCACAGAGGCTGATGTGTGGAGTATAGGTGTGATAGCATATATTCTACTATGTGGTAGTCGTCCATTTTGGGCTCGAACAGAGTCGGGTATTTTTAGGGCAGTTTTGAAGGCCGATCCAGGTTTTGACGAAGCTCCCTGGCCATCCTTATCTTCAGAAGCAAAAGATTTTGTCCAACGCCTACTGAATAAAGACCCTCGGAAGCGAATATCTGCGGCTCAGGCTCTGAGTCATCCTTGGATACGTAATTACAACGATGTAAAAGTTCCACTTGATATCTTAATATTTAAACTCATGAAGACTTATATGAGATCATCATCCTTGCGTAAGGCTGCCTTAAGGGCCTTATCGAAGACATTAACTGCTGACGAGCTCTATTATCTGAGGGAACAATACGCACTTTTGGAACCAAGCAAAAATGGGAGCATATCCTTGGAGAACATTAACAAGGCCTTGAAGAAATATGCAACTGATGCCATGAAAGAGTCTCGTATCACAGATTTTCTTTCCTCGCTGAGTTCATTACAATATAGAAGGATGGACTTTGAAGAATTTTGTGCTGCTGCATTAAGTGTGCACCAACTCGAAGCTCTTGATCGTTGGGAACAACATGCCCGTTGCGCATATGAACTTTTTGAGAAAGATGGAAACAGGGCTATTGTTATCGAAGAACTTGCTTCAGAACTTGGACTTGGTCCGTCTATCCCTGTTCATGTTGTTCTTCATGACTGGATACGCCACACCGATGGGAAGTTAAGCTTTCTCGGGTTTGTCAAATTATTGCATGGTGTATCTAGCCGAAGCCTTCCAAAGGTTCAGTTATGA 1785 0.4297 MGGCTSKPQKPNPYALRETETDPTQIPKTPLSPAGENHRRKDDVIAGKKSPFFPFYSPSPARFFKKSPSTTPSRSTSSTPRRFFRRAFPPPSPAKHIRAVLARRQGKKETAAAIPEDSEEGGGDLDKRFGFSKDFSSRLEVGEEVGRGHFGYTCSAKFKKGEFKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHSNLVQFYDAFEDQENVYIVMELCEGGELLDMILSRGGKYTEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTSKDESSELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPGFDEAPWPSLSSEAKDFVQRLLNKDPRKRISAAQALSHPWIRNYNDVKVPLDILIFKLMKTYMRSSSLRKAALRALSKTLTADELYYLREQYALLEPSKNGSISLENINKALKKYATDAMKESRITDFLSSLSSLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLPKVQL 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01788 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Trre7g01788 594 FunFam Calcium-dependent protein kinase SK5 311 406 - -
Trre7g01788 594 FunFam CDPK-related kinase 1 437 510 - -
Trre7g01788 594 SUPERFAMILY EF-hand 432 582 IPR011992 -
Trre7g01788 594 FunFam CDPK-related kinase 3 131 303 - -
Trre7g01788 594 MobiDBLite consensus disorder prediction 103 125 - -
Trre7g01788 594 Pfam Protein kinase domain 140 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g01788 594 ProSitePatterns Protein kinases ATP-binding region signature. 145 171 IPR017441 GO:0005524
Trre7g01788 594 Gene3D - 426 580 - -
Trre7g01788 594 ProSiteProfiles Protein kinase domain profile. 139 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g01788 594 CDD STKc_CAMK 140 400 - -
Trre7g01788 594 Gene3D Transferase(Phosphotransferase) domain 1 228 413 - -
Trre7g01788 594 SUPERFAMILY Protein kinase-like (PK-like) 137 439 IPR011009 -
Trre7g01788 594 MobiDBLite consensus disorder prediction 63 82 - -
Trre7g01788 594 Gene3D - 419 510 - -
Trre7g01788 594 FunFam CDPK-related kinase 1 132 227 - -
Trre7g01788 594 Gene3D Phosphorylase Kinase; domain 1 141 227 - -
Trre7g01788 594 PANTHER SERINE/THREONINE-PROTEIN KINASE 123 568 - -
Trre7g01788 594 MobiDBLite consensus disorder prediction 1 90 - -
Trre7g01788 594 SMART serkin_6 139 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01788 Trre-Chr7 13932567 13936479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01788 1 589 EF-hand Containing Proteins AT3G50530 73.511 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre7g01788 Pkinase 3.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01788 - - gmx:100798913 1043.88