Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01782 ATGGGAAGAACAATGTGCTTCTTAGACATTAGCATAGGGGAAGAACTAGAAGGAAGAATATTAGTGGAGCTTTACAATGATATTGTTCCAAAAACTGCAGAGAATTTTAGAGCTCTATGCACTGGTGAGAAAGGCATTGGTCCTAACACTGGGGTGCCCCTCCATTTTAAGGGGTCTTGCTTTCATCGTATTGTTAAAGGTTGTATGATCGAAGGAGGTGATATATCTGCTGGAGACGGTACCGGAGGAGAATCTATATACGGACTCAAGTTTGAAGACGAAACTTTTGAAATGAAACATGAAAGGAAAGGGATGTTATCACTGGCAAACACCGGTCCTAATACAAATGGTTCTCAGTTTTTCATCTCTACTACCCGAACCGCTCATCTAGATGGTAAGCATGTTGTATTTGGAAAAGTAGTCAAAGGAATGGGTGTAGTCCGTTCAATTGAGCATGTTACAACCGGAGATGAGGATCGGCCTGTTCTTGATGTTAAAATCGTGGATTGTGGAGAAATTCCCGAAGGAGAAGAAGATGGTATAACAAACTTTTTCAAAGACGGTGATACTTATCCTGATTGGCCAGCAGACCTTGATGAGAGCCCTATTGAACTTGAATGGTGGTTGAAATCGGTTGACTCAATCAAAGCTTTTGGTAATGAGTATTACAAGAAACAAGACTACAAAGTGGCTCTTAGGAAGTATCGAAAGGCTTTACGTTACTTGGATATATGTTGGGAGAAGGAAGGGATCGACGAAGATAAAAGTTCAGGTTTGAGAAAAACGAAATCGCAGATTTTTACAAACAGCTCCGCTTGTAAATTGAAATTAGGCGATGTTAAAGGAGCATTGATGGACACAGAATTCGCAATGCGTGAAGGTAATAACAATGCCAAAGCTTTGTTCCGCCAAGGACAGGCATACATGGTACTCAACGACATTGATGCTGCAGTTGAAAGCTTTAAAAAAGCACTAACATTGGAGCCAAATGATGCTGGAATAAAAAAGGAACTTTCAGCTGCTAAAAAGAAGAGAAAAAAGCATATAGTAAGATGTTCCAATAACACAAAGATTTAA 1077 0.3983 MGRTMCFLDISIGEELEGRILVELYNDIVPKTAENFRALCTGEKGIGPNTGVPLHFKGSCFHRIVKGCMIEGGDISAGDGTGGESIYGLKFEDETFEMKHERKGMLSLANTGPNTNGSQFFISTTRTAHLDGKHVVFGKVVKGMGVVRSIEHVTTGDEDRPVLDVKIVDCGEIPEGEEDGITNFFKDGDTYPDWPADLDESPIELEWWLKSVDSIKAFGNEYYKKQDYKVALRKYRKALRYLDICWEKEGIDEDKSSGLRKTKSQIFTNSSACKLKLGDVKGALMDTEFAMREGNNNAKALFRQGQAYMVLNDIDAAVESFKKALTLEPNDAGIKKELSAAKKKRKKHIVRCSNNTKI 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01782 358 SUPERFAMILY TPR-like 208 347 IPR011990 GO:0005515
Trre7g01782 358 Gene3D - 1 179 IPR029000 -
Trre7g01782 358 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Trre7g01782 358 Pfam Tetratricopeptide repeat 298 331 IPR001440 GO:0005515
Trre7g01782 358 Gene3D Tetratricopeptide repeat domain 207 353 IPR011990 GO:0005515
Trre7g01782 358 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 6 173 - -
Trre7g01782 358 SMART tpr_5 212 245 IPR019734 GO:0005515
Trre7g01782 358 SMART tpr_5 298 331 IPR019734 GO:0005515
Trre7g01782 358 FunFam peptidyl-prolyl cis-trans isomerase D 210 354 - -
Trre7g01782 358 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Trre7g01782 358 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
Trre7g01782 358 SUPERFAMILY Cyclophilin-like 3 174 IPR029000 -
Trre7g01782 358 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Trre7g01782 358 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Trre7g01782 358 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Trre7g01782 358 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Trre7g01782 358 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Trre7g01782 358 ProSiteProfiles TPR repeat region circular profile. 298 331 - -
Trre7g01782 358 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01782 Trre-Chr7 13887376 13890112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01782 14 170 U-box Gene Family AT5G67530 40.506 1.86e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01782 K05864 - gmx:100804110 621.313