Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01763 ATGGAGCAACAAGGCCATAGAAACAGAAATGGTATGATTCCTTATCATCTCATTCCTGGTATTCTACATCTGGGTCATGGTGGAAATCAACCTAGGATGATGATCAGTACCCAAGAGGCTCATGCTTATGTCCTAGATCACCACTTTATTCTCAATCAACATAACATCAATCCGGTTTTCAGACACAATGTTGATAGAATTAGAAATCAACCTAGGGTAAGTACCCAACATGCCTCGGCTGCTTACGATGTCCAAGATGGCCATTTTATTCTTCATGAAAATATCGGTCAGGTGAACCGCCAAGCTCCGACAAGAAGACGGTATAATACCCATTTTGATAGAAATCAACCTAGGGTGAGTACCCAAGATGCCTCGTCGTCAGGTTATGGTTATTATATCCAAGATGGCCACTTTATTCTTCATGAAAACATCAGTCAGGTGAACCAACAAGTTCCGACAAGAAGAAGCGACATTGGAGGAGGTACCCGGAAACAGTTTGATGCCACTCTTGAGAAAATCATAATTCAACAAGTACCGATAGATTCTGAAGCTACGACATGCTCCATTTGTCTTGTGGAGTTTTCAGTTGGGTTGGAAGCTATTCGATTGCCTAGTCCGTGTTCGCATGTCTATCACAAAGATTGTATTCTCGAGTGGTTGGATAGATCTAGCACATGCCCTTTGTGTCGTAGGCCTGTTTTGTGA 705 0.4241 MEQQGHRNRNGMIPYHLIPGILHLGHGGNQPRMMISTQEAHAYVLDHHFILNQHNINPVFRHNVDRIRNQPRVSTQHASAAYDVQDGHFILHENIGQVNRQAPTRRRYNTHFDRNQPRVSTQDASSSGYGYYIQDGHFILHENISQVNQQVPTRRSDIGGGTRKQFDATLEKIIIQQVPIDSEATTCSICLVEFSVGLEAIRLPSPCSHVYHKDCILEWLDRSSTCPLCRRPVL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01763 234 SMART ring_2 187 229 IPR001841 -
Trre7g01763 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 234 IPR013083 -
Trre7g01763 234 ProSiteProfiles Zinc finger RING-type profile. 187 230 IPR001841 -
Trre7g01763 234 SUPERFAMILY RING/U-box 174 233 - -
Trre7g01763 234 CDD RING-H2_PA-TM-RING 186 230 - -
Trre7g01763 234 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 87 231 - -
Trre7g01763 234 SMART ringv_2 186 230 IPR011016 GO:0008270
Trre7g01763 234 Pfam Ring finger domain 186 230 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01763 Trre-Chr7 13692594 13693298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01763 184 230 C3H Transcription Factor Family AT5G54990 51.064 1.11e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01763 - K22378 tpra:123917723 269.626