Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01725 ATGGGTGGTTACACCTTTTATGACAAAATTTCTTCATCTGGGTATGATGATTTAGGCTTGTTGAATCAATCTTTGCATAACTTTGGAGCTTCTAATGGTGTTTCAAGAGATGGGTTTTCACCATCATCAAATTTAGAGAGTGAGAAGGAAAATGTGGTGAAATATGATATTTCTGAGGCTAAAGCTTTAGCTGCTTTGAAGAATCATAGTGAAGCAGAGAAGAGAAGGAGGGAGAGAATAAATGGTCATCTTGCAACATTGCGTGGTCTTGTGTCTTCCACTGATCAAAAGATGGACAAAGCCACATTACTTGCTAAAGTGGTTAACCAAGTGAAGGAATTGAAGAAGAATGCAATGGAAGCAAGCAAAGGTTTTCTCATTCCAATGGAAGATGATGAAGTGAAAGTTGAACCATATGATATTGAATTAGGATATGGATGCATGTCTTACAAGGCAACTATCTGCTGTGATTACCAACCTGAGATACTATCTGACATCAAAAAAGCACTTGATACACTTCAACTTCAACTAGTGAAAGTGGAAATGTCAACATTGGAAAACAGGATGAAGAATGTGTTTGTCTTTACATGTTGCAAAGGGGATAATCATAATAGTGTTGATGTTGAAGCATGTAAAAGTATTGCAAATGTTGTTCATAAAGCACTAGATTCTGTGTTGGAAAAGGCTTACAACTCAATGGAGTTTTCACTCAAAACTTCATATCCAAACAAGAGGAGAAGAATGTGCTTTGCTGAAACATCCACTTCCTCATGCAACCATGGTTCTTGTTGCTCATGCTAA 801 0.3708 MGGYTFYDKISSSGYDDLGLLNQSLHNFGASNGVSRDGFSPSSNLESEKENVVKYDISEAKALAALKNHSEAEKRRRERINGHLATLRGLVSSTDQKMDKATLLAKVVNQVKELKKNAMEASKGFLIPMEDDEVKVEPYDIELGYGCMSYKATICCDYQPEILSDIKKALDTLQLQLVKVEMSTLENRMKNVFVFTCCKGDNHNSVDVEACKSIANVVHKALDSVLEKAYNSMEFSLKTSYPNKRRRMCFAETSTSSCNHGSCCSC 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01725 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 116 IPR036638 GO:0046983
Trre7g01725 266 SMART finulus 70 120 IPR011598 GO:0046983
Trre7g01725 266 CDD ACT_UUR-ACR-like 153 222 - -
Trre7g01725 266 Gene3D - 60 123 IPR036638 GO:0046983
Trre7g01725 266 PANTHER TRANSCRIPTION FACTOR BHLH30 45 250 IPR045847 GO:0003700|GO:0006355
Trre7g01725 266 Pfam Helix-loop-helix DNA-binding domain 68 114 IPR011598 GO:0046983
Trre7g01725 266 CDD bHLH_AtAIG1_like 59 138 - -
Trre7g01725 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 114 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01725 Trre-Chr7 13412438 13415528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01725 57 195 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 43.662 4.37e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre7g01725 HLH 9.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01725 - - psat:127107084 354.755