Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01724 ATGGATTTCTCCAAAAAGCGCAAAACTCAAGAGAACGGCGACGCCAATTCTCCTCCTCCTTCAACCGACGCCGACGTAACCACCACCACCACCACCCCTCTCACCTCCGAAGACATCCGCAAAATTCTCCAACCCTTCACTCAAGACCAACTACTAGACCTTCTCCAATCAGCCTCTCTTCAGCACCCTAACGTTCTCGACGCCGTTCGCTCCGTCGCCGACCGTGACACCTCTCGCCGTAAACTCTTCGTCCGTGGTCTCTCAGGCGAAACCACCACCGACACACTCAGTTCAATTTTCTCTTCTTACGGTGAACTAGATGAAGCCATCGTGATATTCGATAAAAACACTGGTAGGTCTAAGGGATACGGTTTCGTCGTGTTCAAACACGTTGATGGTGCTATTCTCGCTTTAAAAGAACCAAGCAAGAAAATCGATGGAAGAATGACGGTGACACAGCTTGCGGCGGCGGGTTCTGGTTCTACCGGTGGCGATGTTTCTGCTCGTAAGGTATTTGTAGGTAACGTTCCTTTTGAAGTATCAGCTGAGAGTTTATTGAGTGAGTTTTCTAAGTATGGTGAAATTGAAGAGGGTCCATTAGGGTTTGATAAAGCGAGTGGTAAAACGAGAGGTTTTGCTTTCTTTGTTTACAAAACAGAAGAAGGTGCTAGGGCTTCACTTGTTGAATCTAACAAAATCGTTGATGGTCATCAAGTGATTTGTAAGTTGGCTGTTGATAACAAAAAGCCCAAGCCCGGGACACAAAACCCATCGGGCTATCCAGTGGATAACTCTAATACTAATTATCATGCTCCTAATCCTACAATGATGCCGCAGTATGGTGCTCCTCCTAATAGTTATGGGCAACCTTATAGTAATCAGGTTCCTTCTGCTGGTGGGTATGGGCCTGGAATTGGTGGGGGTGCTCCTCAATATGGTGGGCCTGTTGCTGGACCTGGACCTGTTTCTGGTCAAAGAGCACCTCCTCCTTCTGTTGGTGGATATTCCGATGGTTCGCAGCGTGCCGCCGCCTTATTATTGAGGTGTTTCATTCAGCTTTGTGATGGCTTCTTGGGCGCTAGTGCTTTAAATGGTTGTGCTGATTTCGTGCATGCAGACAATGAAATTTTTGGTCTTGGTTACCTGGATTGCTGTAATTTGTTGCTGCTTCACTACCTCTGCTTCTATGTGTTATGGTGCTATTTGCTCTAG 1212 0.4703 MDFSKKRKTQENGDANSPPPSTDADVTTTTTTPLTSEDIRKILQPFTQDQLLDLLQSASLQHPNVLDAVRSVADRDTSRRKLFVRGLSGETTTDTLSSIFSSYGELDEAIVIFDKNTGRSKGYGFVVFKHVDGAILALKEPSKKIDGRMTVTQLAAAGSGSTGGDVSARKVFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGARASLVESNKIVDGHQVICKLAVDNKKPKPGTQNPSGYPVDNSNTNYHAPNPTMMPQYGAPPNSYGQPYSNQVPSAGGYGPGIGGGAPQYGGPVAGPGPVSGQRAPPPSVGGYSDGSQRAAALLLRCFIQLCDGFLGASALNGCADFVHADNEIFGLGYLDCCNLLLLHYLCFYVLWCYLL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01724 403 FunFam UBP1-associated protein 2C isoform A 63 164 - -
Trre7g01724 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 148 IPR000504 GO:0003723
Trre7g01724 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 237 IPR000504 GO:0003723
Trre7g01724 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 246 IPR000504 GO:0003723
Trre7g01724 403 SMART rrm1_1 170 242 IPR000504 GO:0003723
Trre7g01724 403 SMART rrm1_1 81 153 IPR000504 GO:0003723
Trre7g01724 403 SUPERFAMILY RNA-binding domain, RBD 70 155 IPR035979 GO:0003676
Trre7g01724 403 MobiDBLite consensus disorder prediction 316 335 - -
Trre7g01724 403 Gene3D - 4 164 IPR012677 -
Trre7g01724 403 PANTHER GEO13361P1-RELATED 167 323 - -
Trre7g01724 403 MobiDBLite consensus disorder prediction 13 33 - -
Trre7g01724 403 MobiDBLite consensus disorder prediction 1 33 - -
Trre7g01724 403 Gene3D - 165 270 IPR012677 -
Trre7g01724 403 SUPERFAMILY RNA-binding domain, RBD 166 264 IPR035979 GO:0003676
Trre7g01724 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 157 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01724 Trre-Chr7 13406222 13408036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01724 152 340 C2H2 Transcription Factor Family AT2G19380 28.251 7.23e-15 74.7