Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01710 ATGCATTTTTTTACTTTCGTTAGTCTTCTAACACAAGCAAGAACATGGTTCTCCTTTTTATTAATCTCCTTGGTTTTCATCAATGGCTACAAAGCTGAGGTTAGAAGTGGAGACACCAAAGTTATACCTATAGGTGCAATAATTGATGTTAATTCTCGAGTTGGGAAAGAACAAAGAGTAGCCATGGATATTGCTGCTCAAAATTACAATAATATTTCAAATACTTTCAAACTTGCTCTATATTTTCAGGAACCAACCATGGATTCCTTCAAAGCTACTTCTCTTGCTGAAGATATGATTAAAAAGCAGAAGGTGGAAGTGATTGTAGGAATGCACACATGGACAGAAGCAGCTTCAGTAGCTGAATTAATACATGAAGCTCAAGTTAATGTTCCTCTTATATCCTTTGTAGCACCTGCAATTACTCCACCATTGATGGAAATTCGTTGGCCGTCTTTGGTGAGACTCGCTAACAATGGAACAGCATATGTGAAATGTATTGCTGATTTGGTTCATGTTTATAATTGGCATAGTGTGGTAGCCATTTATGAAGATGATGCATATGGTGGTGATTCTGGGATGCTAGCACTGCTATCCGAGGCTCTCCAAGATATTGGCTCGACGATTGAATATCGTTTAGCTTTGCCGTCATTAGCATATCTGCCGAATCCGGGAGAGTTTATTCGTAAAGAGCTGTTTAAGATAACAGAAAACACGCAATCTCGAGTATTCATTGTGTTGCAATCATCATTAGAAATGGGGATTCATTTGTTTAAGGAAGCTTCACAAATGGGACTAGTGGATAGAGATTCGGCTTGGATGATCCCCGAGAGCATAACTAATTTGTTGGATTCTGTCAATAAGTCAAGTATTTCTTATATGGAGGGAGCTTTAGGAATCAAAACCTACTACTCAGAAAACAGCAATGACTATACAAAATTTGAGGCTCAATTCAGAAGAGCTTTTCGTGACAAAAATCCCGAGGAAGACAACCGCGACCCGGGATTTTACGCTTTGCAAGCATATGATAGCATTCAAATGATTGGAAATGCAATAGATAGGATAGCTAGTGACAAAAAAACTTTACTACAAGAAATAGTGTCCAGCAATTTTCTTGGTTTAAGTGGAAAAATTAAATTTGAATCAGAACAGCTTTCGCAGAATCCTACCTTGAGGATTGTAAATGTAGATGGGAAGAGTTACAGAGAATTAGACTTGTGGAATCTTGAAAATGGATTCTTCACTAACATCTCGACAAAAGAAGGTAAAAATGGTGCTTCTAGGAACTCGGAAAGTTTAACCGGTGCAGTAATTTGGCCAGGGAAGTTGCTTACAGTTCCAAAGGGATGGAACCTACCTACTAAACAAAAGCCATTGAGAATTGCAGTCCCTGGAAGAACTGCATTTTCTAAATTTGTCAAGGTTGATTACGATGCGCGAGGAAATCCAAAATTTAGTGGATTTTGCATTGAAATTTTTGACAAGGCGTTGGAAGTTTTGGGGTATGATCTTCCTTATGAATATCATCCTATCAATGGAACATATCCTGAGCTTGTTCAACTTGTTTATAACAAGACTTATGACGGTGTTGTTGGCGATATGACCATACTGGCAGAGAGAATGGAATATGTAGATTTTACTGTGCCATATGCAGAATCAGGATTGTCGATGATAGTAACGGAAAAGTCCCAAGAATCAGCATGGATGTTTATGAAGCCCTTCACCTGGCAAATGTGGGCGGTAACCGGTGCCATCTTGATTTATACAATGTTAGTAGTATGGTACCTTGAGAAAGAAGACAATGAAGAGTTTCAAGGCAATTGGAAAAACCAAATCAGCACTTCTGTTTGGTTTACTTTCTCATCACTATTCTTTGCTCATAGGGAGAAAATGCATAGCAATTTATCTCGCGTAGTGATGGTATCGTGGCTGTTTCTAGTTTTGATTCTTAATTCAAGCTACACCGCGAGTCTTTCTTCAATGCTCACGGTTCAACAACTACATGCAAATGTCACAGACATTGAGTGGCTGAAAAAGAACGACATGAAAATTGGTTGTGATGGAGATTCATTTGTTAGGACATACCTAGAGGAAGTCGAAAAATTCAAACCAGGGAACATCGTCAACATTAGTAATGAAAACAATTATGACCCTGAATTCAAAAACTCCTCAATTGCAGCAGCTTTTCTCGAACTCCCTTACGAAAAAGTATACATCAGTAAATACTGCAAGGGGTACTCTGCTTCTACACCAACCACCAGATTTGGAGGACTTGGATTTATGTTCCAGAAAGGATCCCCCTTGGTCAGAGATGTTTCTAAAGCTATTTTGGAGCTCTTACAAAAGGGAGAATTGAAGAAATTAGAAGATATATGGTTGAATCCCACAAATGTGTGCTCCAACAATTTGAATTCCAAGAATACAGAAAGTTTGAAGCTGGGAAGTTTCTGGATTCTCTATGTGATTTCTGGTGCCACATCTACTATTTGTTTTCTAGTTTCTACTATCCATTCCCTGAAATCTAGACAAACAGCCAATGATGATGCACAAGAAAGTAGTGGCACCCAAAATGATGTGAGCAGATGGAAAAGGGTGGTTAAATTAAGTAGGAAAATTTGTAGCAGAAAGCATAATAAAACAAGCAAGGTAAATGAAGATGTTACTGATTCTCCTTCAAGTACCCCTGAGCATCAGCAGGGAATGGCTCTTCAATTGCCAGAAATCATAACAGTCTCTTCACCACCAACAGAGTTGTAA 2757 0.3852 MHFFTFVSLLTQARTWFSFLLISLVFINGYKAEVRSGDTKVIPIGAIIDVNSRVGKEQRVAMDIAAQNYNNISNTFKLALYFQEPTMDSFKATSLAEDMIKKQKVEVIVGMHTWTEAASVAELIHEAQVNVPLISFVAPAITPPLMEIRWPSLVRLANNGTAYVKCIADLVHVYNWHSVVAIYEDDAYGGDSGMLALLSEALQDIGSTIEYRLALPSLAYLPNPGEFIRKELFKITENTQSRVFIVLQSSLEMGIHLFKEASQMGLVDRDSAWMIPESITNLLDSVNKSSISYMEGALGIKTYYSENSNDYTKFEAQFRRAFRDKNPEEDNRDPGFYALQAYDSIQMIGNAIDRIASDKKTLLQEIVSSNFLGLSGKIKFESEQLSQNPTLRIVNVDGKSYRELDLWNLENGFFTNISTKEGKNGASRNSESLTGAVIWPGKLLTVPKGWNLPTKQKPLRIAVPGRTAFSKFVKVDYDARGNPKFSGFCIEIFDKALEVLGYDLPYEYHPINGTYPELVQLVYNKTYDGVVGDMTILAERMEYVDFTVPYAESGLSMIVTEKSQESAWMFMKPFTWQMWAVTGAILIYTMLVVWYLEKEDNEEFQGNWKNQISTSVWFTFSSLFFAHREKMHSNLSRVVMVSWLFLVLILNSSYTASLSSMLTVQQLHANVTDIEWLKKNDMKIGCDGDSFVRTYLEEVEKFKPGNIVNISNENNYDPEFKNSSIAAAFLELPYEKVYISKYCKGYSASTPTTRFGGLGFMFQKGSPLVRDVSKAILELLQKGELKKLEDIWLNPTNVCSNNLNSKNTESLKLGSFWILYVISGATSTICFLVSTIHSLKSRQTANDDAQESSGTQNDVSRWKRVVKLSRKICSRKHNKTSKVNEDVTDSPSSTPEHQQGMALQLPEIITVSSPPTEL 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01710 918 Gene3D - 37 165 - -
Trre7g01710 918 MobiDBLite consensus disorder prediction 885 918 - -
Trre7g01710 918 Gene3D - 335 458 - -
Trre7g01710 918 CDD GluR_Plant 457 793 - -
Trre7g01710 918 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 855 IPR015683 -
Trre7g01710 918 CDD PBP1_GABAb_receptor_plant 44 417 IPR044440 -
Trre7g01710 918 FunFam Glutamate receptor 163 332 - -
Trre7g01710 918 FunFam Glutamate receptor 567 705 - -
Trre7g01710 918 MobiDBLite consensus disorder prediction 877 918 - -
Trre7g01710 918 Pfam Ligand-gated ion channel 795 824 IPR001320 GO:0015276|GO:0016020
Trre7g01710 918 PIRSF IGluLR_plant 11 909 IPR017103 -
Trre7g01710 918 FunFam Glutamate receptor 454 567 - -
Trre7g01710 918 SUPERFAMILY Periplasmic binding protein-like I 40 450 IPR028082 -
Trre7g01710 918 Gene3D - 459 566 - -
Trre7g01710 918 Gene3D - 166 332 - -
Trre7g01710 918 Pfam Bacterial extracellular solute-binding proteins, family 3 482 794 IPR001638 -
Trre7g01710 918 Pfam Receptor family ligand binding region 61 398 IPR001828 -
Trre7g01710 918 SMART GluR_14 458 795 IPR001320 GO:0015276|GO:0016020
Trre7g01710 918 SUPERFAMILY Periplasmic binding protein-like II 434 794 - -
Trre7g01710 918 Gene3D - 567 701 - -
Trre7g01710 918 Gene3D - 740 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01710 Trre-Chr7 13259365 13262951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01710 18 852 Ion Channels AT2G29120 33.601 8.03e-143 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01710 - - gmx:100780320 1265.37