Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01682 ATGTTAGATCTTAATCTAAACGATGATAACTCGACGGATTCGACTCAGAACATTAACTCACCAATGATTTCGGAGAATTTTCCCCAAACTTCATGGAATCAAATGGTGGAATCAGGAACATCGAATTCCTCAATAGTCAATGCGGACGGTTCAAGCAACAACGCAAACGACGAGGACTCATGTTCCACGCGCGTTGATGACGTTTTCACTTTCAGTTTCGATATTCTTAAAATGGAAGGTTCAAACGACGTCGTAACGAAGGAGTTTTTTCCTGTAAATGGAGGAGGTGATGATGAAGGTTGGTGTAATAATTGGAAGTTACAAGCTACGTCGTCGTTTCCGGTGAAGAATAGTTCGGTTGATCTATCGTTTAATCAGAATGAAGAAATGAAGATTGTTCAGCCTCAACAACAAGCTAAGAAAAGTAGAAGAGGACCAAGGTCTCGTAGCTCCCAATACAGAGGAGTCACGTTTTACAGAAGAACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTAGGTGGATTTGACACAGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGAGGAGTTGGTGCTGACATAAATTTTAATCTGAATGATTATGAGGATGATCTTAAACAGACGAAGAATTTATCCAAAGAGGAATTCGTGCACATACTTCGCCGTCAAAGTACTGGTTTTTCAAGAGGGAGTTCAAAATACCGCGGAGTAACACTCCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGTTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAAGCAGCTATCATTAACAACGGAAGGGAAGCAGTGACTAATTTTGAGCCCAGTTCATACCAAGGAGAGATGAAATCTGCAGCCATCAATGAAGGCGGCAGTCAAAATCTTGATCTCAATTTGGGTATAGCCACACCAGGACATGGTCCTAAAGAAAATTCAGGGAAATTTCACTCCCCTTCTGTCCCTTACACAAGTTCAAGGATGGAAACCAATGTTTTAGGAACCGGTAATCCATCTTTGAAAAGGCTATTAGTAACTGAAGAGCGTCATTCTCTATGGAATGACGTGTATCCCGCTTTCTTTCCCAATGAGGAAAGAGCAGATAGTATCGGCAAAGATCCTTCAAAAGGACTCCCCAATAGGGCGTGGCAACCTCATGGCCAGATCACTGCCACCCAAATGTTACCGGCCTCTGCAGCAGCAGCATCATCAGGATTCTCAAATTCATCTCCCTTTCCATCGTTGACTCCCATATTTCCACCAAGATCTATGAACACAATTCCCCATAGTCTCTATTTTACTTTGCCCAATGCGCCTAGCAGCAACGCGTCTCAATATTATTACCAGGTTAAGCCCCCGCAGGCACGACCCTAG 1452 0.4339 MLDLNLNDDNSTDSTQNINSPMISENFPQTSWNQMVESGTSNSSIVNADGSSNNANDEDSCSTRVDDVFTFSFDILKMEGSNDVVTKEFFPVNGGGDDEGWCNNWKLQATSSFPVKNSSVDLSFNQNEEMKIVQPQQQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVGADINFNLNDYEDDLKQTKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIINNGREAVTNFEPSSYQGEMKSAAINEGGSQNLDLNLGIATPGHGPKENSGKFHSPSVPYTSSRMETNVLGTGNPSLKRLLVTEERHSLWNDVYPAFFPNEERADSIGKDPSKGLPNRAWQPHGQITATQMLPASAAAASSGFSNSSPFPSLTPIFPPRSMNTIPHSLYFTLPNAPSSNASQYYYQVKPPQARP 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01682 483 ProSiteProfiles AP2/ERF domain profile. 244 301 IPR001471 GO:0003700|GO:0006355
Trre7g01682 483 MobiDBLite consensus disorder prediction 1 59 - -
Trre7g01682 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 112 338 - -
Trre7g01682 483 SMART rav1_2 244 307 IPR001471 GO:0003700|GO:0006355
Trre7g01682 483 SMART rav1_2 152 214 IPR001471 GO:0003700|GO:0006355
Trre7g01682 483 MobiDBLite consensus disorder prediction 1 61 - -
Trre7g01682 483 CDD AP2 243 303 IPR001471 GO:0003700|GO:0006355
Trre7g01682 483 Pfam AP2 domain 243 288 IPR001471 GO:0003700|GO:0006355
Trre7g01682 483 Pfam AP2 domain 152 200 IPR001471 GO:0003700|GO:0006355
Trre7g01682 483 PRINTS Ethylene responsive element binding protein signature 283 303 IPR001471 GO:0003700|GO:0006355
Trre7g01682 483 PRINTS Ethylene responsive element binding protein signature 245 256 IPR001471 GO:0003700|GO:0006355
Trre7g01682 483 Gene3D AP2/ERF domain 243 302 IPR036955 GO:0003700|GO:0006355
Trre7g01682 483 Gene3D AP2/ERF domain 151 210 IPR036955 GO:0003700|GO:0006355
Trre7g01682 483 ProSiteProfiles AP2/ERF domain profile. 152 208 IPR001471 GO:0003700|GO:0006355
Trre7g01682 483 MobiDBLite consensus disorder prediction 132 153 - -
Trre7g01682 483 FunFam AP2-like ethylene-responsive transcription factor 151 210 - -
Trre7g01682 483 SUPERFAMILY DNA-binding domain 243 302 IPR016177 GO:0003677
Trre7g01682 483 SUPERFAMILY DNA-binding domain 151 209 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01682 Trre-Chr7 12913884 12917199 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01682 74 327 AP2-EREBP Transcription Factor Family AT4G36920 66.292 1.20e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre7g01682 AP2 9.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01682 K09284 - gmx:100788303 630.172