Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01665 ATGGATCCTTCTAGTGGACAACACCAGCAAATGTCTAACCAGTCATTGGAGAACATGTTAACATGTTCTAAAACACAAGAAGACAAAAAACCAAAACCTCAACCAGAAGCTCTAAAATGTCCAAGATGTGACTCAAGTAACACCAAATTTTGTTACTACAACAATTACAGTCTTTCTCAACCAAGATATTTCTGCAAATCATGTAGAAGATATTGGACAAAAGGAGGTACATTAAGAAATGTTCCTGTTGGTGGGGGGTGTAGAAAGAACAAAAGATCATCATCATCATCAACATCAAAAAGAACACAAGATCAAACATTTCCAACAAATCCAAATCCACTCACTTGTTTCCCTTCATTGTCTTATGATACCAATGATCTTACACTTGCATTAGCTAGGCTTCAAAAGGGTCATCTTGGATTTGATCATGAACATGATTTTTCAATTTTAGGAAACCACACAAACATTAACACAAACACCTCATGTGCAATTCTTAACAATCATGGTATGAACAATTCTTCCAATAACCATGGATTCTTTGAAGCACTAATTGGATCTCAGAACAATGCTCAAAATCTTTATTACACTGGTGAAGTAGATAATGGCAATGCTAATGGTGAAATGATGTTACCCTATGATCATGAAATGAGCATTGCTACTACTCAAGCAGTGACAGTTACTACAATGAAACAAGAAATGTGTAATGTTAGGGAACAAAATGAAAATAGGGTTTTGTTGGGTTTTCCATGGCAGTTCAATAATTCTGACACAAACATGGCTGAAATTGACCACTCAGGAAGAAGTGGCTGGAATGGTCTCAATTCATCTTGGCATGGCCTTCTCAATAGCCCCCTAATGTAG 861 0.3647 MDPSSGQHQQMSNQSLENMLTCSKTQEDKKPKPQPEALKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSTSKRTQDQTFPTNPNPLTCFPSLSYDTNDLTLALARLQKGHLGFDHEHDFSILGNHTNINTNTSCAILNNHGMNNSSNNHGFFEALIGSQNNAQNLYYTGEVDNGNANGEMMLPYDHEMSIATTQAVTVTTMKQEMCNVREQNENRVLLGFPWQFNNSDTNMAEIDHSGRSGWNGLNSSWHGLLNSPLM 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01665 286 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 215 IPR045174 GO:0003700|GO:0006355
Trre7g01665 286 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Trre7g01665 286 MobiDBLite consensus disorder prediction 23 37 - -
Trre7g01665 286 MobiDBLite consensus disorder prediction 1 38 - -
Trre7g01665 286 MobiDBLite consensus disorder prediction 1 22 - -
Trre7g01665 286 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Trre7g01665 286 MobiDBLite consensus disorder prediction 83 112 - -
Trre7g01665 286 MobiDBLite consensus disorder prediction 89 112 - -
Trre7g01665 286 Pfam Dof domain, zinc finger 37 92 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01665 Trre-Chr7 12757563 12759167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01665 1 286 C2C2-Dof Transcription Factor Family AT2G28510 41.121 1.24e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre7g01665 zf-Dof 8.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01665 - - gmx:100799737 397.897