Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01660 ATGAGTCCTTGTGCTGCTTGCAAGATTTTGAGAAGAAGATGTAGTGTTGATAAATGTGTTTTGGCACCTTATTTTCCTCCTACTGATCCTGCTAAGTTTACCATTGCTCATAGAGTTTTTGGTGCTAGCAACATCATCAAATTCTTACAGGAACTTCCAGAAGCTCAAAGAGCTGATGCAGTAACAAGCATGGTTTATGAAGCAAGTGCAAGAGTAAGAGATCCAGTTTATGGTTGTGCAGGATCAATTTGTCAACTCCAAAAACAAGTCAATGAGCTTCAAGCACAATTAGCCAAAGCACAAGCTGAAGTTGTAAACATGCAACTCCAACAAGCCCATCTTGTTGCTCTAATTTGCATGGAAATGTCACAAAGCTCACAAGAATCACCACAACAAATATCATTGGATAATAATAATTTTATTCAAAGTCCTAACCATAATAGTGGCCATCAAATTGGTTTGAACTTTTTTGATGAGAACACTAATCCAAACTCATTGTGGGAGCCACTTTGGACATGA 519 0.3796 MSPCAACKILRRRCSVDKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPEAQRADAVTSMVYEASARVRDPVYGCAGSICQLQKQVNELQAQLAKAQAEVVNMQLQQAHLVALICMEMSQSSQESPQQISLDNNNFIQSPNHNSGHQIGLNFFDENTNPNSLWEPLWT 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01660 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 144 - -
Trre7g01660 172 Coils Coil 83 110 - -
Trre7g01660 172 ProSiteProfiles LOB domain profile. 2 104 IPR004883 -
Trre7g01660 172 Pfam Lateral organ boundaries (LOB) domain 3 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01660 Trre-Chr7 12701821 12704278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01660 1 172 AS2 family AT1G07900 62.286 5.40e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre7g01660 LOB 8.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01660 - - gmx:100797804 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01660 7 12701821 12704278 Trre7g01660 7 12701821 12704278 ECH
Trre11g04237 11 55063898 55065936 Trre7g01660 7 12701821 12704278 PCT