Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01659 ATGGAGATTACTACTAATGACACTTCTTCTCCAACTTCTTCATCTAATTCACCACAATTAATAGCTCAAGCTCCTTCTCAAGTTGTTGTTATGAGTCCTTGTGCTGCTTGCAAGATTTTGAGAAGAAGATGTAGTGTTGATAAATGTGTTTTGGCACCTTATTTTCCTCCTACTGATCCTGCTAAGTTTACCATTGCTCATAGAGTTTTTGGTGCTAGCAACATCATCAAATTCTTACAGGAACTTCCAGAAGCTCAAAGAGCTGATGCAGTAACAAGCATGGTTTATGAAGCAAGTGCAAGAGTAAGAGATCCAGTTTATGGTTGTGCAGGATCAATTTGTCAACTCCAAAAACAAGTCAATGAGCTTCAAGCACAATTAGCCAAAGCACAAGCTGAAGTTGTAAACATGCAACTCCAACAAGCCCATCTTGTTGCTCTAATTTGCATGGAAATGTCACAAAGCTCACAAGAATCACCACAACAAATATCATTGGATAATAATAATTTTATTCAAAGTCCTAACCATAATAGTGGCCATCAAATTGGTTTGAACTTTTTTGATGAGAACACTAATCCAAACTCATTGTGGGAGCCACTTTGGACATGA 609 0.376 MEITTNDTSSPTSSSNSPQLIAQAPSQVVVMSPCAACKILRRRCSVDKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPEAQRADAVTSMVYEASARVRDPVYGCAGSICQLQKQVNELQAQLAKAQAEVVNMQLQQAHLVALICMEMSQSSQESPQQISLDNNNFIQSPNHNSGHQIGLNFFDENTNPNSLWEPLWT 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01659 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 32 173 - -
Trre7g01659 202 ProSiteProfiles LOB domain profile. 32 134 IPR004883 -
Trre7g01659 202 Pfam Lateral organ boundaries (LOB) domain 33 131 IPR004883 -
Trre7g01659 202 Coils Coil 113 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01659 Trre-Chr7 12701821 12704368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01659 29 202 AS2 family AT1G07900 62.712 1.05e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre7g01659 LOB 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01659 - - ccaj:109798760 268.085