Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01658 ATGGACTCAACCGAAGACTTACACTTCTTGTTAACGGCGCAACGCCACGAACTCACGGCGGCGGAATCCATGGAAACCGATCTTGACTTCGCTTTCCGTCTCCAGTTACAAGAAGCCCTAGCCGCTTCTCTCACCGACCATCCTTCTTCCTCCACAGACGTTATTTTCGAAGAACCAATCATCGACGACGCCGTTTTCAACGCAACGTCTCTCCAATTGGAAGAGCTTGAAAAGATGGAGGCAGAAATGCACGACAGGGAGCAGAGTGAGAGAGTAATGCGTGAGGCGAAGGATGATCTCAACCGTCGGATTCATGATCAGAAAATGGCGTCGGAGATTCTCAATTTTTCTGAGGAAGATTGGGAGGAATGGGGGGATAATTTCGAGAAACCGTTTGGGGAAGGTTGTTCGAAGAGTGGTAAAGATGAAGGTGCGGTTGTTAGGGTTTATTTTAAGGGTTTAGTGAGTGAAGAAAGTGTGAGAGGTGAGAATTTTGCTGGAATTGGTGTTGCGGTTTGTGATTTGACTGATAATTTGATATTTGAAGTTTCTAAAGCTGTTGTTGGGAATGGAACAAGTAAAGTTGCTGTTGAACTTAAGGCTTTGATTGAAGCTTTCAATGCTGTTCTTGCTTTGGATTTGAAGAATGTTATTTGTTTTGGTGATTATTATCCACTTTTTCAATTTCTAAGTGGAAAATGGCCTGCAAAACAGAGGAAAATTGCTACGTTAGTTAATCAGGTGAATCTGCTTCAAAGAAAATTTGCATACTGCAGTCCAAGGCTAGTGGCGAGACAGGATCTGAAATTTGCATTAAAGCTTGCAAAAGATGCAATTGTTTCTCAGTCCACAAGGCCTGCTGAATCTAGCAGCGTAAAGAGTCTGAAAGAAACTTGTGTCATTTGTTTGGAGGATGCCGATCATAGTCAATTTTTTTCGGTTGACGGTTGTCATCACAGGTATTGCTTTTCTTGCATGAAGCAACATGTGGAGGTGAAGTTGCTCCATGGAATGGTGCCAATATGTCCTCATGAGGGATGCAAGAATGAACTTCTAGTTGACAGTTGCCGGAAATTCTTGACTTCTAAATTAGTTGAAACTATGCAGCAACGAAAAATGGAAGCTTCAATTCCGCTTACTGAGAAAATTTACTGTCCTTATCCAAGATGCTCTGCATTAATGTCAAAAAGTGAAGTTTTAAACTACTCCAAAAGTCTTATGGGCTCCGAACATTCATTACCCAAGAAATGCGTAAAATGTCATGGTCTTTTCTGTTTCGGCTGCAAGGTTCCTTGGCACAGTGGTATGACATGTTATACTTACAAAAGGTTGAATCCTAACCCTCCAGCAGATGATGTGAAGTTGAAGTTTCTGGCGTCAAGGAGTCTTTGGAAGCAGTGCGTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTACCACATGACTTGCAGATGTGGCTACGAATTTTGCTATAAATGTGGAGCTGAGTGGAAGGACAAAAAAGCAACATGTTCTTGTCCACTTTGGGAAGAAGACAATATTTGGTTAGAAGATCGCCATGCTGAGTCAGAGGAAGATGAAGATGATGATTTTTATTATTAA 1608 0.4179 MDSTEDLHFLLTAQRHELTAAESMETDLDFAFRLQLQEALAASLTDHPSSSTDVIFEEPIIDDAVFNATSLQLEELEKMEAEMHDREQSERVMREAKDDLNRRIHDQKMASEILNFSEEDWEEWGDNFEKPFGEGCSKSGKDEGAVVRVYFKGLVSEESVRGENFAGIGVAVCDLTDNLIFEVSKAVVGNGTSKVAVELKALIEAFNAVLALDLKNVICFGDYYPLFQFLSGKWPAKQRKIATLVNQVNLLQRKFAYCSPRLVARQDLKFALKLAKDAIVSQSTRPAESSSVKSLKETCVICLEDADHSQFFSVDGCHHRYCFSCMKQHVEVKLLHGMVPICPHEGCKNELLVDSCRKFLTSKLVETMQQRKMEASIPLTEKIYCPYPRCSALMSKSEVLNYSKSLMGSEHSLPKKCVKCHGLFCFGCKVPWHSGMTCYTYKRLNPNPPADDVKLKFLASRSLWKQCVKCNHMIELAEGCYHMTCRCGYEFCYKCGAEWKDKKATCSCPLWEEDNIWLEDRHAESEEDEDDDFYY 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01658 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 378 IPR013083 -
Trre7g01658 535 FunFam RBR-type E3 ubiquitin transferase 294 379 - -
Trre7g01658 535 ProSiteProfiles Zinc finger RING-type profile. 299 343 IPR001841 -
Trre7g01658 535 FunFam RBR-type E3 ubiquitin transferase 147 282 - -
Trre7g01658 535 ProSitePatterns Zinc finger RING-type signature. 317 326 IPR017907 -
Trre7g01658 535 FunFam RBR-type E3 ubiquitin transferase 436 534 - -
Trre7g01658 535 SMART ibrneu5 366 438 IPR002867 GO:0008270
Trre7g01658 535 SMART ibrneu5 451 508 IPR002867 GO:0008270
Trre7g01658 535 SUPERFAMILY RING/U-box 381 443 - -
Trre7g01658 535 CDD Rcat_RBR_unk 464 499 - -
Trre7g01658 535 CDD BRcat_RBR_unk 380 438 - -
Trre7g01658 535 Coils Coil 79 99 - -
Trre7g01658 535 SUPERFAMILY RING/U-box 298 378 - -
Trre7g01658 535 SUPERFAMILY RING/U-box 452 515 - -
Trre7g01658 535 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 267 515 IPR031127 GO:0004842|GO:0016567
Trre7g01658 535 ProSiteProfiles TRIAD supradomain profile. 295 518 IPR044066 -
Trre7g01658 535 Pfam Reverse transcriptase-like 163 278 IPR002156 GO:0003676|GO:0004523
Trre7g01658 535 Gene3D - 435 535 - -
Trre7g01658 535 Pfam IBR domain, a half RING-finger domain 457 506 IPR002867 GO:0008270
Trre7g01658 535 Pfam IBR domain, a half RING-finger domain 368 438 IPR002867 GO:0008270
Trre7g01658 535 Gene3D - 147 285 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01658 Trre-Chr7 12687244 12691673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01658 148 497 C3H Transcription Factor Family AT2G19610 35.196 6.83e-64 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01658 - - gmx:100790037 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01658 7 12687244 12691673 Trre7g01658 7 12687244 12691673 ECH