Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01646 ATGGATTTGGTAGCTGGTGTTAAGGAAAAATTGACATATTTCCGTATAAAGGAGCTCAAAGATGTGCTGACTCAGTTAGGACTTTCAAAGCAGGGAAAGAAGCAGGACCTCGTCGATAGGATATTGTCCATTATCTCAGATGAACAAGTATCCAAAATGTGGGCTAAGAAAAATGCTGTTGGGAAAGAACAGGTGGCAAAATTAGTGGATGACACATATAGGAAAATGCAGATATCAGGGGCCACTGATCTAGCATCAAAGGGTCAGGCTGTGTCAGATAGTAGTAATGTGAAGGTTAAAGCTGAAGTTGAGGAGTCCTTTCAAATTCAATCAGCTACAAAGATTCGCTGTCTCTGTGGAAGTACATTGGAAACAGAGGATTTGATCAAGTGTGATGATGCAAAATGTAAAGTGTGGCAACACATAAGTTGCGTTATTATTCCAGAGAAACCTATGGAAGGCATCCCGCCAGTTCCTGATAAATTTTATTGTGAACTATGTCGACTCAGTCGTGCAGACCCGTTTTGGGTTTCAGTATCTCATCCTTTACTACCTGTAAAGTTGACCACAACCAGTATTCCAACTGATGGTACCAACCCAGTGCAGTGTGTGGAGAAATCATTTCAACTCACAAGAGCAGATAGGGACATGGTATCAAAGCAAGAATTTGATGTTGAGGCTTGGTGTATGCTTCTAAACGATAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTAGCAATCAATGGTCTTCCTGTTCGAACAACTAACAGACCCGGTTCACAACTGCTTGGGGCTAATGGCCGTGATGATGGTCCAATTATCACGCCGCATACAAAAGATGGAATTAATAAGATTTCATTAACAGTATGTGATCCTCGCATTTTTTGTTTAGGTGTTCGCATTGTTAGAAGGCGCAGTTTGCAACAGATCCTAAACTTAATTCCGAAGGAGCCTGACGGCGAGCCTTTTGAAGATGCTCTTGCACGTGTCTGTCGTTGTGTTGGGGGTGGAAATGCAGCTGACAATGCTGACAGTGACAGTGATTTAGAAGTGGTTTCAGATACTTTCAGCATTAACCTTCGTTGTCCGATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAAACCTTGCATTCACATGGGTTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATCAACGGTCAAGAAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCATTGGAGAATATCATCGTTGACCCTTATTTCAATCGCATCACTTCTAAGATGATTAATTGCGGTGAAGATGTTACAGAGGTTGAGGTGAAGCCTGATGGCTCTTGGCGTGTTAAGGCAAAAAGTGAAAATGAACGTTTCGATTTAGGGAGTCTTGGACAATGGCACTCTCCTGATGGATCCCTCTGTGCTTCTACTGATGGAGATATCAAAAGAGTAGAAACACTGAAGCAAGTAAAACAGGAAGGTTTTTCAGACGGACCTGCTGGTTTAAAACTTGGCATTAGGAAGAATCGCAATGGAATTTGGGAAGTCAGTAAGCCCGAGGACACAAACACCTCTTCTGGTCATAGATTAAAAGAGGTTTTTGGAAATCCTGAGCATGTTGTTATTCCAATGAGCAGCAGTGGCACCGGAAGCGGTCGGGATGGTGATGATCCCAGTGTTAACCAGGGTGGTGGTGGGCATGTTGATTATTCTACTACCAATGGAATCGAGATGGATTCTCTGTCCCTCAATAATGTTGATTTAGCTCAGGGATATACTGCACTTAACACATCTACTCAGGTGGGTGGTGCAGAAGTAATTGTTCTTAGCGACTCTGATGAAGAAAATGATATATTGGTGTCTCCTGCTATTGCGAATAACAGTAACCAAAATGATACTGCAGATGGTTACTCCATGCCACCACCTGTAATGGTTGACCCATTTGCTGAAGATCCGAATCTTGGTGGAAATCCATGCTTGGGGCTTTTTCATAATGATGATTTTGGAATGTCTTCCATGTGGTCGCTGTCTTCTGCAACTCAGGCTGCTCCAGGATTCCAGTTGTTTGACTCTGATGCAGATGTATCTGATGCATTGGTCCATTTGCAGCATGGTCCTAGTAATGGTACCTCACCATTAAATGGTTATGCATTGGCTCCCGAAACTACTTTGGGATCTAGTAGTCTCTTACATGATTCCTCTGCCGGTCGGTCAGATGCCGACTTAAACGGTGGTTTGGTTGACAACCCATTGGCATTTAATGGAGATGATCCCTCACTTAAGATTTTTCTTCCAACAAGACCGGCTGAGTCATCTATGCAGAATGAATTGAGAGATCAAGCAAATCTATCCAATGGTGTCTGCACTGAAGATTGGTTTTCCCTTTCTCTTGGAGGTGGTGCTGGCAGCAGTAATGGTGATGCTTCCACTCAAAATGGATTGGATTCTAGACATCAAGTCCCAGCCCGAGACAATGGCACAAATAATTTGGCTGATACTGCTTCTTTGCTTCTTGGCATCAATGATGTGAGATCTGACAAAGCAGCTAAACAAAGGCCAGGTAGCCCTTTCACATTTCCTCGCCAAAAACGTTCTGTAAGGCCCCGCTTGTACCTTTCTATTGATTCAGATTCAGAATAA 2640 0.4284 MDLVAGVKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSIISDEQVSKMWAKKNAVGKEQVAKLVDDTYRKMQISGATDLASKGQAVSDSSNVKVKAEVEESFQIQSATKIRCLCGSTLETEDLIKCDDAKCKVWQHISCVIIPEKPMEGIPPVPDKFYCELCRLSRADPFWVSVSHPLLPVKLTTTSIPTDGTNPVQCVEKSFQLTRADRDMVSKQEFDVEAWCMLLNDKVPFRMQWPQYTDLAINGLPVRTTNRPGSQLLGANGRDDGPIITPHTKDGINKISLTVCDPRIFCLGVRIVRRRSLQQILNLIPKEPDGEPFEDALARVCRCVGGGNAADNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIVDPYFNRITSKMINCGEDVTEVEVKPDGSWRVKAKSENERFDLGSLGQWHSPDGSLCASTDGDIKRVETLKQVKQEGFSDGPAGLKLGIRKNRNGIWEVSKPEDTNTSSGHRLKEVFGNPEHVVIPMSSSGTGSGRDGDDPSVNQGGGGHVDYSTTNGIEMDSLSLNNVDLAQGYTALNTSTQVGGAEVIVLSDSDEENDILVSPAIANNSNQNDTADGYSMPPPVMVDPFAEDPNLGGNPCLGLFHNDDFGMSSMWSLSSATQAAPGFQLFDSDADVSDALVHLQHGPSNGTSPLNGYALAPETTLGSSSLLHDSSAGRSDADLNGGLVDNPLAFNGDDPSLKIFLPTRPAESSMQNELRDQANLSNGVCTEDWFSLSLGGGAGSSNGDASTQNGLDSRHQVPARDNGTNNLADTASLLLGINDVRSDKAAKQRPGSPFTFPRQKRSVRPRLYLSIDSDSE 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01646 879 CDD SP-RING_Siz-like 362 411 IPR031141 -
Trre7g01646 879 Pfam PHD-finger 116 168 IPR019787 -
Trre7g01646 879 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Trre7g01646 879 SUPERFAMILY SAP domain 1 64 IPR036361 -
Trre7g01646 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 449 IPR013083 -
Trre7g01646 879 SUPERFAMILY FYVE/PHD zinc finger 108 171 IPR011011 -
Trre7g01646 879 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 663 - -
Trre7g01646 879 MobiDBLite consensus disorder prediction 801 829 - -
Trre7g01646 879 ProSiteProfiles Zinc finger SP-RING-type profile. 348 431 IPR004181 GO:0008270
Trre7g01646 879 ProSitePatterns Zinc finger PHD-type signature. 117 167 IPR019786 -
Trre7g01646 879 MobiDBLite consensus disorder prediction 844 879 - -
Trre7g01646 879 FunFam E3 SUMO-protein ligase SIZ2 335 449 - -
Trre7g01646 879 Gene3D SAP domain 1 62 IPR036361 -
Trre7g01646 879 SMART sap_9 11 45 IPR003034 -
Trre7g01646 879 MobiDBLite consensus disorder prediction 543 567 - -
Trre7g01646 879 FunFam E3 SUMO-protein ligase SIZ1 1 66 - -
Trre7g01646 879 SMART PHD_3 116 168 IPR001965 -
Trre7g01646 879 Pfam SAP domain 14 42 IPR003034 -
Trre7g01646 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 173 IPR013083 -
Trre7g01646 879 CDD PHD_Bye1p_SIZ1_like 116 167 - -
Trre7g01646 879 Pfam MIZ/SP-RING zinc finger 361 409 IPR004181 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01646 Trre-Chr7 12577370 12587399 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre7g01646 PHD 2.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01646 - - gmx:100793735 1457.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04246 11 55112680 55121762 Trre7g01646 7 12577370 12587399 PCT