Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01643 ATGGAAATTGATCTGAACCATGAAGTGACTGAAATTGACAAGAATGCATTGTGTATTCAGGAATGTGAAAAAGGTTGTTGTTTGTCTCCTTCAAATTGTTCAACTTCACCACTTGTTTCTTCTTCTTATCTTGAGCTATGGCATGCTTGTGCTGGCCCTCTTATTTCACTTCCTAAGAAAGGAAATATTGTGGTTTATTTTCCACAAGGTCACTTAGAACAATTTGCTTCTTTTTCTCCTTTTAAACCATTGGAGATACCAACCTATGATCTTCAGCCTCAGATCTTTTGCAGGGTTGTCAATATTCAGCTACTTGCCAATAAGGAGAATGATGAAGTTTATACTCAAGTTACTTTGCTTCCTCAAGCTGAGTTTGAAGAGATGCATATGGAGGGAAAAGAAGTTGGGGAATTAGAAGGCGATGAAGAGGGAGACGGAGGGTCACCTACAAAAGCAACCCCTCACATGTTCTGCAAGACACTAACTGTTTCTGATACCAGCACTCATGGTGGATTCTCTGTGCCTCGTAGAGCTGCTGAAGACTGTTTTCCACCTTTGGATTATAAGCTGCAGAGACCCTCTCAAGAGCTTATTGCCAAAGATCTGCATGGTGTAGAGTGGAAATTTCGACATATTTATAGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGATGGAGCATTTTTGTGAACCAAAAGAATCTTGTTTCTGGTGATGCAGTACTCTTTCTAAGGAGTGAAAATGGAGAGCTGAGATTAGGAATCAGAAGAGCTATTAGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGTAACCAAAACTGTTATCCTAATTTCCTTTCTTCTGTGGCAAATGCTATATCCACCAAAAGCATGTTTCATGTTTTCTATAGTCCAAGAGCAAGTCATGCAGAATTTGTTGTTCCATATCAAAAATATGTTAAAAGCATCAAGAATCCAGTGACCATAGGGACAAGATTCAAAACGAGAGTCGAAATGGATGAATCGCCAGAAAGAAGAAGTAGTAGTGGTATGTTGATTGGAATGAATGACTTGGATCCCTATAGATGGCCTAAATCCAAATGGAGGTGCTTAATGGTTAGATGGGATGAAGATATTGAGACTAATCATCAAGACCGAGTATCTCCGTGGGAGATTGATCCTTCTTCTCCTCTTCCTCCCCTAAGCATTCAGTCTTCTCCAAGACTGAAGAAACCGCGGACCGGTCTGCAGGTTACCTCGCCCAATCACCTCATCACTGGAAGCAGTGGAAGGATGGGGTTTGAGGAATCTATAAGATCACCAAAGGTCTTGCAAGGTCAAGAAAATGCCGGTTTTATGTCACTATACTATGGATGTGACAAAAAAACAAACCAGCCGGGTTTTGAGTTGAGCTCTTCAAGTCATCATCAAAACCTTGCATCAACTGGAATAGGAAAAGTAGTTACCTCTTCTGAGCTTATGAGTGTTCATCCTTTCAGTTATGCAGGCTTTATGGAAAGTAACAATTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTAAACTGAAATCGATTACGGGAAAAGTTGATTTCAATATTGGTTCTTGGGGAACCAAACCAAATTTTCAATCTGCATATTTTCCTTTTGGAGATATTCACAAAGATAATCAAGTTAACATGTTTAGCTCAAAACAGACAACTTTCCTAAGCGATAATGTTGCGTTTAACACATCGACAACATTGGCAGCGAACATTAGAAAAGAAGTTAATCTCTCAAATGAGCATAAGCTACAGGAAAATATAACTAATGCTGCTTCATTAGGGGCTACTAATATAAATGTTGCAAACGATAACAATGTGAAGGGAAAGGTAAACTCGTGCAAATTATTCGGGTTTCCTTTGTCTGGCGAAACTAGTAGCCAGAATACTGCAAAACGGAGTTGCACAAAGGTTCACAAGCAAGGAAGCTTAGTCGGAAGAGCCATCGATCTGTCAAGGTTGAGCGGCTACATCGATCTTCTAAGTGAACTAGAGAAACTATTTGGAATGGAAGGACTTCTTAGAGATTCTAATAAGGGATGGAGGATCCTCTACACTGACAGTGAGAATGACATAATGGTGGTGGGGGATGATCCATGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACCAAAGAAGAAGTTGAGAAGATGACATTTGGGATGACAAATGATGATACTCATAGCTGTTTGGAACAAGCACCAGTGATTATGGAACCTTCTAAGTCTTCCTCAGTTGGTCAACCAGATTATTCTCCAAAAGTAGTTAGAGTCTAA 2307 0.401 MEIDLNHEVTEIDKNALCIQECEKGCCLSPSNCSTSPLVSSSYLELWHACAGPLISLPKKGNIVVYFPQGHLEQFASFSPFKPLEIPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAEFEEMHMEGKEVGELEGDEEGDGGSPTKATPHMFCKTLTVSDTSTHGGFSVPRRAAEDCFPPLDYKLQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFLRSENGELRLGIRRAIRPRNGLPESIVGNQNCYPNFLSSVANAISTKSMFHVFYSPRASHAEFVVPYQKYVKSIKNPVTIGTRFKTRVEMDESPERRSSSGMLIGMNDLDPYRWPKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSSPLPPLSIQSSPRLKKPRTGLQVTSPNHLITGSSGRMGFEESIRSPKVLQGQENAGFMSLYYGCDKKTNQPGFELSSSSHHQNLASTGIGKVVTSSELMSVHPFSYAGFMESNNFPRVLQGQEICKLKSITGKVDFNIGSWGTKPNFQSAYFPFGDIHKDNQVNMFSSKQTTFLSDNVAFNTSTTLAANIRKEVNLSNEHKLQENITNAASLGATNINVANDNNVKGKVNSCKLFGFPLSGETSSQNTAKRSCTKVHKQGSLVGRAIDLSRLSGYIDLLSELEKLFGMEGLLRDSNKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTKEEVEKMTFGMTNDDTHSCLEQAPVIMEPSKSSSVGQPDYSPKVVRV 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01643 768 Pfam Auxin response factor 283 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre7g01643 768 CDD B3_DNA 155 257 IPR003340 GO:0003677
Trre7g01643 768 MobiDBLite consensus disorder prediction 392 421 - -
Trre7g01643 768 Pfam AUX/IAA family 633 724 IPR033389 -
Trre7g01643 768 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
Trre7g01643 768 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
Trre7g01643 768 ProSiteProfiles PB1 domain profile. 640 722 IPR000270 GO:0005515
Trre7g01643 768 SMART B3_2 157 259 IPR003340 GO:0003677
Trre7g01643 768 FunFam Auxin response factor 320 393 - -
Trre7g01643 768 SUPERFAMILY CAD & PB1 domains 640 719 - -
Trre7g01643 768 SUPERFAMILY DNA-binding pseudobarrel domain 150 268 IPR015300 -
Trre7g01643 768 Gene3D - 321 392 - -
Trre7g01643 768 FunFam Auxin response factor 155 259 - -
Trre7g01643 768 Gene3D - 635 729 - -
Trre7g01643 768 Gene3D - 155 259 IPR015300 -
Trre7g01643 768 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 43 729 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre7g01643 768 FunFam Auxin response factor 635 729 - -
Trre7g01643 768 MobiDBLite consensus disorder prediction 380 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01643 Trre-Chr7 12557073 12561578 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01643 39 768 B3 DNA Binding Superfamily AT5G60450 60.748 0.0 839
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre7g01643 AUX_IAA 1e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01643 - - gmx:100783513 1209.9