Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01642 ATGGAAATTGATCTGAACCATGAAGTGACTGAAATTGACAAGAATGCATTGTGTATTCAGGAATGTGAAAAAGGTTGTTGTTTGTCTCCTTCAAATTGTTCAACTTCACCACTTGTTTCTTCTTCTTATCTTGAGCTATGGCATGCTTGTGCTGGCCCTCTTATTTCACTTCCTAAGAAAGGAAATATTGTGGTTTATTTTCCACAAGGTCACTTAGAACAATTTGCTTCTTTTTCTCCTTTTAAACCATTGGAGATACCAACCTATGATCTTCAGCCTCAGATCTTTTGCAGGGTTGTCAATATTCAGCTACTTGCCAATAAGGAGAATGATGAAGTTTATACTCAAGTTACTTTGCTTCCTCAAGCTGAGTTTGAAGAGATGCATATGGAGGGAAAAGAAGTTGGGGAATTAGAAGGCGATGAAGAGGGAGACGGAGGGTCACCTACAAAAGCAACCCCTCACATGTTCTGCAAGACACTAACTGTTTCTGATACCAGCACTCATGGTGGATTCTCTGTGCCTCGTAGAGCTGCTGAAGACTGTTTTCCACCTTTGGATTATAAGCTGCAGAGACCCTCTCAAGAGCTTATTGCCAAAGATCTGCATGGTGTAGAGTGGAAATTTCGACATATTTATAGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGATGGAGCATTTTTGTGAACCAAAAGAATCTTGTTTCTGGTGATGCAGTACTCTTTCTAAGGAGTGAAAATGGAGAGCTGAGATTAGGAATCAGAAGAGCTATTAGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGTAACCAAAACTGTTATCCTAATTTCCTTTCTTCTGTGGCAAATGCTATATCCACCAAAAGCATGTTTCATGTTTTCTATAGTCCAAGAGCAAGTCATGCAGAATTTGTTGTTCCATATCAAAAATATGTTAAAAGCATCAAGAATCCAGTGACCATAGGGACAAGATTCAAAACGAGAGTCGAAATGGATGAATCGCCAGAAAGAAGAAGTAGTAGTGGTATGTTGATTGGAATGAATGACTTGGATCCCTATAGATGGCCTAAATCCAAATGGAGGTGCTTAATGGTTAGATGGGATGAAGATATTGAGACTAATCATCAAGACCGAGTATCTCCGTGGGAGATTGATCCTTCTTCTCCTCTTCCTCCCCTAAGCATTCAGTCTTCTCCAAGACTGAAGAAACCGCGGACCGGTCTGCAGGTTACCTCGCCCAATCACCTCATCACTGCAGGAAGCAGTGGAAGGATGGGGTTTGAGGAATCTATAAGATCACCAAAGGTCTTGCAAGGTCAAGAAAATGCCGGTTTTATGTCACTATACTATGGATGTGACAAAAAAACAAACCAGCCGGGTTTTGAGTTGAGCTCTTCAAGTCATCATCAAAACCTTGCATCAACTGGAATAGGAAAAGTAGTTACCTCTTCTGAGCTTATGAGTGTTCATCCTTTCAGTTATGCAGGCTTTATGGAAAGTAACAATTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTAAACTGAAATCGATTACGGGAAAAGTTGATTTCAATATTGGTTCTTGGGGAACCAAACCAAATTTTCAATCTGCATATTTTCCTTTTGGAGATATTCACAAAGATAATCAAGTTAACATGTTTAGCTCAAAACAGACAACTTTCCTAAGCGATAATGTTGCGTTTAACACATCGACAACATTGGCAGCGAACATTAGAAAAGAAGTTAATCTCTCAAATGAGCATAAGCTACAGGAAAATATAACTAATGCTGCTTCATTAGGGGCTACTAATATAAATGTTGCAAACGATAACAATGTGAAGGGAAAGGTAAACTCGTGCAAATTATTCGGGTTTCCTTTGTCTGGCGAAACTAGTAGCCAGAATACTGCAAAACGGAGTTGCACAAAGGTTCACAAGCAAGGAAGCTTAGTCGGAAGAGCCATCGATCTGTCAAGGTTGAGCGGCTACATCGATCTTCTAAGTGAACTAGAGAAACTATTTGGAATGGAAGGACTTCTTAGAGATTCTAATAAGGGATGGAGGATCCTCTACACTGACAGTGAGAATGACATAATGGTGGTGGGGGATGATCCATGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACCAAAGAAGAAGTTGAGAAGATGACATTTGGGATGACAAATGATGATACTCATAGCTGTTTGGAACAAGCACCAGTGATTATGGAACCTTCTAAGTCTTCCTCAGTTGGTCAACCAGATTATTCTCCAAAAGTAGTTAGAGTCTAA 2310 0.4013 MEIDLNHEVTEIDKNALCIQECEKGCCLSPSNCSTSPLVSSSYLELWHACAGPLISLPKKGNIVVYFPQGHLEQFASFSPFKPLEIPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAEFEEMHMEGKEVGELEGDEEGDGGSPTKATPHMFCKTLTVSDTSTHGGFSVPRRAAEDCFPPLDYKLQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFLRSENGELRLGIRRAIRPRNGLPESIVGNQNCYPNFLSSVANAISTKSMFHVFYSPRASHAEFVVPYQKYVKSIKNPVTIGTRFKTRVEMDESPERRSSSGMLIGMNDLDPYRWPKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSSPLPPLSIQSSPRLKKPRTGLQVTSPNHLITAGSSGRMGFEESIRSPKVLQGQENAGFMSLYYGCDKKTNQPGFELSSSSHHQNLASTGIGKVVTSSELMSVHPFSYAGFMESNNFPRVLQGQEICKLKSITGKVDFNIGSWGTKPNFQSAYFPFGDIHKDNQVNMFSSKQTTFLSDNVAFNTSTTLAANIRKEVNLSNEHKLQENITNAASLGATNINVANDNNVKGKVNSCKLFGFPLSGETSSQNTAKRSCTKVHKQGSLVGRAIDLSRLSGYIDLLSELEKLFGMEGLLRDSNKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTKEEVEKMTFGMTNDDTHSCLEQAPVIMEPSKSSSVGQPDYSPKVVRV 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01642 769 CDD B3_DNA 155 257 IPR003340 GO:0003677
Trre7g01642 769 MobiDBLite consensus disorder prediction 392 421 - -
Trre7g01642 769 FunFam Auxin response factor 636 730 - -
Trre7g01642 769 Pfam AUX/IAA family 634 725 IPR033389 -
Trre7g01642 769 SUPERFAMILY CAD & PB1 domains 641 720 - -
Trre7g01642 769 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
Trre7g01642 769 ProSiteProfiles PB1 domain profile. 641 723 IPR000270 GO:0005515
Trre7g01642 769 Gene3D - 321 392 - -
Trre7g01642 769 SMART B3_2 157 259 IPR003340 GO:0003677
Trre7g01642 769 FunFam Auxin response factor 320 393 - -
Trre7g01642 769 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
Trre7g01642 769 MobiDBLite consensus disorder prediction 380 425 - -
Trre7g01642 769 SUPERFAMILY DNA-binding pseudobarrel domain 150 268 IPR015300 -
Trre7g01642 769 Pfam Auxin response factor 283 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre7g01642 769 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 43 730 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre7g01642 769 FunFam Auxin response factor 155 259 - -
Trre7g01642 769 Gene3D - 636 730 - -
Trre7g01642 769 Gene3D - 155 259 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01642 Trre-Chr7 12557073 12561578 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01642 39 769 B3 DNA Binding Superfamily AT5G60450 60.481 0.0 836
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre7g01642 AUX_IAA 1e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01642 - - gmx:100783513 1215.29