Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01636 ATGATGTCTAAACAACCCTTTTCAACTTCACCTCATTCAAACACCATGAAAGCTTCTTCATCAAATCATGTTCAACAATCAAACACAAACCCTAATCCAAACTTACCTAAGAAAAAAAGAAACCTACCAGGAACACCAGATCCAGATTCAGAAGTGGTAGCTATGTCACCAAAGTCATTGATGGCGACAAATCGATTCTTATGCGAAATTTGCAACAAAGGTTTCCAAAGAGATCAAAATTTGCAGCTTCATCGACGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAAGCAACAAAGATCAAGTTAAAAAGAAAGTTTATGTGTGTCCTGAGAAGAGTTGTGTGCACCATGAACCTTCAAGAGCTTTGGGAGATTTGACAGGAATAAAGAAACATTACAGTAGAAAACATGGTGAGAAGAAATGGAAATGTGAAAAGTGTTCAAAAAAATACGCAATTCAATCTGATTGGAAAGCTCATAGCAAAATTTGTGGAACTAGAGAATACAAATGCGATTGTGGCACCATTTTTTCCAGGAAAGACAGCTTCATAACTCATAGAGCTTTTTGTGATGCATTGACTGAAGAAAGTGGAAAGATAACAACAGTTCCTGCAGCTTTAAGCAACTTTCGTAATGATCATTTGACAAATACTCATCAATCTCCAAGAATCCCTCAAATTTTTCCTGGTTTTCAGTTTCACTCAGAATTTATCAATTCAGCAAACTCATCATCATTATGGCAGCAAAACCAAGCAAATAATTCTCACTTACTTCATCAAAGTTCTGATATAATGCAAACAATGGATGTGTTTGGATCACAAACACAAACACAAACACAGTGGTTGAATAATCTATCATTACCAATGTTACATGGAGTAATGAAACAAGAACAAGAAGAAAACAAAGATTTGTCTCATAGTGTAATAAGTTCATTGTACTTGAGTCAGAATCAACAAGGTGGATCAAATCACATGTCAGCAACTTCACTGTTACAGAAAGCATGTCAAATTGGATCAACAAGGACAACTATTAGCAATGATAACAACACTGTCTTCAACAATGTGAATCACTTTAACAACATTGTTCATGATGTTCATCAGAAATTTTATAACAAGCAAGATGAAAATGTAGAATTGAATGAGTTGGTTAATTTAGGAGGAAGTAGTAGAACTAATGTTGAAGCTAGTGAGTATTTATTTAATGATTCAAATTCAAATAATTTGTTTGGAATTGTGAATGGTACAAAGGATTTGGATCATGTGGTAATGTCGGTGGATAAAGAGACAAGAACAAGACAGATACATAGGTTAAAAGAGAAAAACCAAATGGGTTTAACAAGAGATTTTCTTGGGGTTGGAGATGATGATAATGATGATGGTTCAATGAGTAGAACTTTTTTACAGCATGAACTTGGTGAATTTAATGGAATGGGATCATTGGGAAATAATTTGCAGATTCAGTATGGTGGTGGACATTATTGTTAG 1488 0.3461 MMSKQPFSTSPHSNTMKASSSNHVQQSNTNPNPNLPKKKRNLPGTPDPDSEVVAMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDQVKKKVYVCPEKSCVHHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAIQSDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCDALTEESGKITTVPAALSNFRNDHLTNTHQSPRIPQIFPGFQFHSEFINSANSSSLWQQNQANNSHLLHQSSDIMQTMDVFGSQTQTQTQWLNNLSLPMLHGVMKQEQEENKDLSHSVISSLYLSQNQQGGSNHMSATSLLQKACQIGSTRTTISNDNNTVFNNVNHFNNIVHDVHQKFYNKQDENVELNELVNLGGSSRTNVEASEYLFNDSNSNNLFGIVNGTKDLDHVVMSVDKETRTRQIHRLKEKNQMGLTRDFLGVGDDDNDDGSMSRTFLQHELGEFNGMGSLGNNLQIQYGGGHYC 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01636 495 MobiDBLite consensus disorder prediction 1 53 - -
Trre7g01636 495 FunFam protein indeterminate-domain 12-like 45 114 - -
Trre7g01636 495 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Trre7g01636 495 MobiDBLite consensus disorder prediction 1 36 - -
Trre7g01636 495 SMART c2h2final6 66 88 IPR013087 -
Trre7g01636 495 SMART c2h2final6 108 138 IPR013087 -
Trre7g01636 495 SMART c2h2final6 143 163 IPR013087 -
Trre7g01636 495 Gene3D Classic Zinc Finger 120 200 - -
Trre7g01636 495 Gene3D Classic Zinc Finger 45 119 - -
Trre7g01636 495 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
Trre7g01636 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Trre7g01636 495 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 465 IPR031140 -
Trre7g01636 495 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01636 Trre-Chr7 12508421 12510469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01636 37 387 IDZ Gene Family AT3G45260 51.813 1.67e-113 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g01636 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01636 K25870 - gmx:100781896 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04252 11 55174797 55176867 Trre7g01636 7 12508421 12510469 PCT