Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01627 ATGGCTTCATCCAACAATTCCATAGCAGAAAACAATAAGAAAACCAAAAATCCAAAAACCTCAACACCTACTAGTAAAATCAAAAAGGAAAAATCCAAAGAGAAGAAGAACGAAGAGAACAATAACAAGAAGAATAAGAAGAAGCTGAATTTCACAAATGGAAATTCCAAAGGAAAACAAGTCAATGGAAAGAAACATCATGAAAGAAACAATGACGATGAAGAAAATGAAGAAGAAGCGAAAACGCATGTGTTTCCAATGAATCGAATCAGAACGATTTTAAAAGGAGAAATTAGCGATATGCGTGTTTCTCAGGAAGCTGTATTGGCTATTAACAAAGCTGCGGAGAAGTTTCTTGAACAATTGGCGCAGGAAGCTTATGTTTGTTCTGTCCAGGATCGTAAGAAGTCTCTGAGTTACAATCATCTATCACGTGTTGTCAGTAAGCAAAGTAGATATGACTTTCTGTCTGATTTTGTTCCTGAGAAAGTGAAAGCTGAGGATGCATTAAGAGAGACAAACTTAAGAGGGAATAGAGGAGGTTAG 546 0.3626 MASSNNSIAENNKKTKNPKTSTPTSKIKKEKSKEKKNEENNNKKNKKKLNFTNGNSKGKQVNGKKHHERNNDDEENEEEAKTHVFPMNRIRTILKGEISDMRVSQEAVLAINKAAEKFLEQLAQEAYVCSVQDRKKSLSYNHLSRVVSKQSRYDFLSDFVPEKVKAEDALRETNLRGNRGG 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01627 181 MobiDBLite consensus disorder prediction 1 22 - -
Trre7g01627 181 Gene3D Histone, subunit A 69 162 IPR009072 GO:0046982
Trre7g01627 181 Coils Coil 26 49 - -
Trre7g01627 181 MobiDBLite consensus disorder prediction 23 46 - -
Trre7g01627 181 MobiDBLite consensus disorder prediction 65 83 - -
Trre7g01627 181 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 85 147 IPR003958 -
Trre7g01627 181 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 43 176 - -
Trre7g01627 181 SUPERFAMILY Histone-fold 69 161 IPR009072 GO:0046982
Trre7g01627 181 MobiDBLite consensus disorder prediction 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01627 Trre-Chr7 12468178 12470969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01627 53 146 CCAAT-HAP5 Transcription Factor Family AT1G07980 41.489 3.58e-17 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre7g01627 CBFD_NFYB_HMF 1.5e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01627 - K03506 lja:Lj3g3v3086110.3 180.644
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01627 7 12468178 12470969 Trre7g01627 7 12468178 12470969 ECH