Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01621 ATGACTTCTCAAGAAAATAAACATGTCACTCAGAAAGAACATGATGCTGATCATACTACTTCTTGCACAAGAACAGTTTTTCTTCCTGTTGTTCATAAGAATGATGATGATCCAATGGGGATAACCGAAGAAACCGCGCATGTTCCTCCAAGGAAGAAACAGAATCTTCTCCTAGAAATACCATCAAGAACACCAGAAGAGTGTTCACAAGAATTTGTTGCAATCAAAATGCCGATGACACCAAGTCCTACTCCAACTCCTACTCCCAAGAGAGTGAATTTTCTAATGACTTCTCGCTCGGTCGATGCTCCGACAAATAATTCTCCTGGATCAGGATCATCAAAAGGCAAATCAACCATAAGAAACTTGCTACCAAAATTGAGCTTTCGGTATAGGACACCAGCAGCAGATACTGAAAAGGCGAATACGCCAACTCTGGATGTTTCCTCTTCAGGTCACCGAGAAAAGCCTTCGATTTCAAGATCGTTGTCGCTTAGTAAAATATTTACTCCTAGAATGAAAAGAACTTCATCATTGCCATTAGAAGAAATTGGACATTCAAACCCGGAATCAACTCATGGTGGAAATGGAAGTGTTGGTGGTTCTCTGAGTAAAAAAGAGACTCGGCAAAAGATAGCGCGTTCTCTTTCAATGCCTGCCAATAACAACAAGGACAAAAGTATAAGAAGGATGGATTCATTTTTTCGTGTCGTACCTTCTACTCCTCGAGTAAAGGAAATAAACGAATTGTTGAGCACGTCCCCGACAAAGGATACTGAAGATGAAGATGCTGACGGCGGCGAAGATATAGCCGAAGAAGAGGCAGTGTGTAGAATCTGTTTGGTTGAATTATGTGAAGGAGGTGAGACATTCAAATTGGAATGTAGCTGCAAAGGCGAACTTGCTTTGGCTCACCAAGAATGTGCCATTAAATGGTTTAGTATAAAGGGCAACAAGACATGTGATGTCTGCAAAAAGGAAGTTACAAACCTTCCTGTCACTCTATTACGGATCCAAAGTGCTCGGAATCGAATTAGTGGAACAAGTAGAGCTCAGCTCGAAGATATAAACGGGTACAGGGTTTGGCAAGAAGTTCCGGTGCTTGTCATTGTCAGCATGTTGGCCTATTTTTGTTTTCTCGAGCAATTATTGGTTACAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTCTCATGTGTACTTGGTCTTCTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATATGGATTTATGCATCTTGCCAGTTCGCTATGGTGGTTCTGTTCGCGCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTTTCCATCCTTCTTGCAACATTTGCTGGATTCGGTGTGGTAATGAGTGGAAGCTCTATCCTTGTGGAGTTTTTCAGATGGAGAAGGAGATGGCAGGCTTCATCAGAGCAGCAACATGGCCCTATACCGATAACACAAGCAGGACAGCATCCGCACACTGTAAACACGCCACGTTCGGACCAATCCAACCATAGCCATGCCGTGGTTCAAGATCTTCAAAACTCAAATCAGAGCTGA 1578 0.4259 MTSQENKHVTQKEHDADHTTSCTRTVFLPVVHKNDDDPMGITEETAHVPPRKKQNLLLEIPSRTPEECSQEFVAIKMPMTPSPTPTPTPKRVNFLMTSRSVDAPTNNSPGSGSSKGKSTIRNLLPKLSFRYRTPAADTEKANTPTLDVSSSGHREKPSISRSLSLSKIFTPRMKRTSSLPLEEIGHSNPESTHGGNGSVGGSLSKKETRQKIARSLSMPANNNKDKSIRRMDSFFRVVPSTPRVKEINELLSTSPTKDTEDEDADGGEDIAEEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKKEVTNLPVTLLRIQSARNRISGTSRAQLEDINGYRVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASCQFAMVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRWQASSEQQHGPIPITQAGQHPHTVNTPRSDQSNHSHAVVQDLQNSNQS 525
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01621 525 PANTHER OS02G0165000 PROTEIN 5 487 - -
Trre7g01621 525 MobiDBLite consensus disorder prediction 1 20 - -
Trre7g01621 525 SUPERFAMILY RING/U-box 273 328 - -
Trre7g01621 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 332 IPR013083 -
Trre7g01621 525 SMART ringv_2 276 325 IPR011016 GO:0008270
Trre7g01621 525 Pfam RING-variant domain 277 324 IPR011016 GO:0008270
Trre7g01621 525 MobiDBLite consensus disorder prediction 1 21 - -
Trre7g01621 525 MobiDBLite consensus disorder prediction 100 225 - -
Trre7g01621 525 MobiDBLite consensus disorder prediction 138 173 - -
Trre7g01621 525 CDD RING_CH-C4HC3_MARCH 277 325 - -
Trre7g01621 525 MobiDBLite consensus disorder prediction 181 205 - -
Trre7g01621 525 MobiDBLite consensus disorder prediction 485 525 - -
Trre7g01621 525 ProSiteProfiles Zinc finger RING-CH-type profile. 269 331 IPR011016 GO:0008270
Trre7g01621 525 MobiDBLite consensus disorder prediction 100 121 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre7g01621 Trre-Chr7 12404806 12408071 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01621 270 380 C3H Transcription Factor Family AT5G05830 33.058 2.65e-12 64.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01621 - - gmx:100788108 732.635
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04266 11 55260908 55264554 Trre7g01621 7 12404806 12408071 PCT