Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre7g01621 | ATGACTTCTCAAGAAAATAAACATGTCACTCAGAAAGAACATGATGCTGATCATACTACTTCTTGCACAAGAACAGTTTTTCTTCCTGTTGTTCATAAGAATGATGATGATCCAATGGGGATAACCGAAGAAACCGCGCATGTTCCTCCAAGGAAGAAACAGAATCTTCTCCTAGAAATACCATCAAGAACACCAGAAGAGTGTTCACAAGAATTTGTTGCAATCAAAATGCCGATGACACCAAGTCCTACTCCAACTCCTACTCCCAAGAGAGTGAATTTTCTAATGACTTCTCGCTCGGTCGATGCTCCGACAAATAATTCTCCTGGATCAGGATCATCAAAAGGCAAATCAACCATAAGAAACTTGCTACCAAAATTGAGCTTTCGGTATAGGACACCAGCAGCAGATACTGAAAAGGCGAATACGCCAACTCTGGATGTTTCCTCTTCAGGTCACCGAGAAAAGCCTTCGATTTCAAGATCGTTGTCGCTTAGTAAAATATTTACTCCTAGAATGAAAAGAACTTCATCATTGCCATTAGAAGAAATTGGACATTCAAACCCGGAATCAACTCATGGTGGAAATGGAAGTGTTGGTGGTTCTCTGAGTAAAAAAGAGACTCGGCAAAAGATAGCGCGTTCTCTTTCAATGCCTGCCAATAACAACAAGGACAAAAGTATAAGAAGGATGGATTCATTTTTTCGTGTCGTACCTTCTACTCCTCGAGTAAAGGAAATAAACGAATTGTTGAGCACGTCCCCGACAAAGGATACTGAAGATGAAGATGCTGACGGCGGCGAAGATATAGCCGAAGAAGAGGCAGTGTGTAGAATCTGTTTGGTTGAATTATGTGAAGGAGGTGAGACATTCAAATTGGAATGTAGCTGCAAAGGCGAACTTGCTTTGGCTCACCAAGAATGTGCCATTAAATGGTTTAGTATAAAGGGCAACAAGACATGTGATGTCTGCAAAAAGGAAGTTACAAACCTTCCTGTCACTCTATTACGGATCCAAAGTGCTCGGAATCGAATTAGTGGAACAAGTAGAGCTCAGCTCGAAGATATAAACGGGTACAGGGTTTGGCAAGAAGTTCCGGTGCTTGTCATTGTCAGCATGTTGGCCTATTTTTGTTTTCTCGAGCAATTATTGGTTACAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTCTCATGTGTACTTGGTCTTCTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATATGGATTTATGCATCTTGCCAGTTCGCTATGGTGGTTCTGTTCGCGCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTTTCCATCCTTCTTGCAACATTTGCTGGATTCGGTGTGGTAATGAGTGGAAGCTCTATCCTTGTGGAGTTTTTCAGATGGAGAAGGAGATGGCAGGCTTCATCAGAGCAGCAACATGGCCCTATACCGATAACACAAGCAGGACAGCATCCGCACACTGTAAACACGCCACGTTCGGACCAATCCAACCATAGCCATGCCGTGGTTCAAGATCTTCAAAACTCAAATCAGAGCTGA | 1578 | 0.4259 | MTSQENKHVTQKEHDADHTTSCTRTVFLPVVHKNDDDPMGITEETAHVPPRKKQNLLLEIPSRTPEECSQEFVAIKMPMTPSPTPTPTPKRVNFLMTSRSVDAPTNNSPGSGSSKGKSTIRNLLPKLSFRYRTPAADTEKANTPTLDVSSSGHREKPSISRSLSLSKIFTPRMKRTSSLPLEEIGHSNPESTHGGNGSVGGSLSKKETRQKIARSLSMPANNNKDKSIRRMDSFFRVVPSTPRVKEINELLSTSPTKDTEDEDADGGEDIAEEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKKEVTNLPVTLLRIQSARNRISGTSRAQLEDINGYRVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASCQFAMVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRWQASSEQQHGPIPITQAGQHPHTVNTPRSDQSNHSHAVVQDLQNSNQS | 525 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre7g01621 | 525 | PANTHER | OS02G0165000 PROTEIN | 5 | 487 | - | - | |
Trre7g01621 | 525 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Trre7g01621 | 525 | SUPERFAMILY | RING/U-box | 273 | 328 | - | - | |
Trre7g01621 | 525 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 263 | 332 | IPR013083 | - | |
Trre7g01621 | 525 | SMART | ringv_2 | 276 | 325 | IPR011016 | GO:0008270 | |
Trre7g01621 | 525 | Pfam | RING-variant domain | 277 | 324 | IPR011016 | GO:0008270 | |
Trre7g01621 | 525 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Trre7g01621 | 525 | MobiDBLite | consensus disorder prediction | 100 | 225 | - | - | |
Trre7g01621 | 525 | MobiDBLite | consensus disorder prediction | 138 | 173 | - | - | |
Trre7g01621 | 525 | CDD | RING_CH-C4HC3_MARCH | 277 | 325 | - | - | |
Trre7g01621 | 525 | MobiDBLite | consensus disorder prediction | 181 | 205 | - | - | |
Trre7g01621 | 525 | MobiDBLite | consensus disorder prediction | 485 | 525 | - | - | |
Trre7g01621 | 525 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 269 | 331 | IPR011016 | GO:0008270 | |
Trre7g01621 | 525 | MobiDBLite | consensus disorder prediction | 100 | 121 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre7g01621 | Trre-Chr7 | 12404806 | 12408071 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre7g01621 | 270 | 380 | C3H Transcription Factor Family | AT5G05830 | 33.058 | 2.65e-12 | 64.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre7g01621 | - | - | gmx:100788108 | 732.635 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre11g04266 | 11 | 55260908 | 55264554 | Trre7g01621 | 7 | 12404806 | 12408071 | PCT |