Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01620 ATGACTTCTCAAGAAAATAAACATGTCACTCAGAAAGAACATGATGCTGATCATACTACTTCTTGCACAAGAACAGTTTTTCTTCCTGTTGTTCATAAGAATGATGATGATCCAATGGGGATAACCGAAGAAACCGCGCATGTTCCTCCAAGGAAGAAACAGAATCTTCTCCTAGAAATACCATCAAGAACACCAGAAGAGTGTTCACAAGAATTTGTTGCAATCAAAATGCCGATGACACCAAGTCCTACTCCAACTCCTACTCCCAAGAGAGTGAATTTTCTAATGACTTCTCGCTCGGTCGATGCTCCGACAAATAATTCTCCTGGATCAGGATCATCAAAAGGCAAATCAACCATAAGAAACTTGCTACCAAAATTGAGCTTTCGGTATAGGACACCAGCAGCAGATACTGAAAAGGCGAATACGCCAACTCTGGATGTTTCCTCTTCAGGTCACCGAGAAAAGCCTTCGATTTCAAGATCGTTGTCGCTTAGTAAAATATTTACTCCTAGAATGAAAAGAACTTCATCATTGCCATTAGAAGAAATTGGACATTCAAACCCGGAATCAACTCATGGTGGAAATGGAAGTGTTGGTGGTTCTCTGAGTAAAAAAGAGACTCGGCAAAAGATAGCGCGTTCTCTTTCAATGCCTGCCAATAACAACAAGGACAAAAGTATAAGAAGGATGGATTCATTTTTTCGTGTCGTACCTTCTACTCCTCGAGTAAAGGAAATAAACGAATTGTTGAGCACGTCCCCGACAAAGGATACTGAAGATGAAGATGCTGACGGCGGCGAAGATATAGCCGAAGAAGAGGCAGTGTGTAGAATCTGTTTGGTTGAATTATGTGAAGGAGGTGAGACATTCAAATTGGAATGTAGCTGCAAAGGCGAACTTGCTTTGGCTCACCAAGAATGTGCCATTAAATGGTTTAGTATAAAGGGCAACAAGACATGTGATGTCTGCAAAAAGGAAGTTACAAACCTTCCTGTCACTCTATTACGGATCCAAAGTGCTCGGAATCGAATTAGTGGAACAAGTAGAGCTCAGCTCGAAGATATAAACGGGGTTTGGCAAGAAGTTCCGGTGCTTGTCATTGTCAGCATGTTGGCCTATTTTTGTTTTCTCGAGCAATTATTGGTTACAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTCTCATGTGTACTTGGTCTTCTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATATGGATTTATGCATCTTGCCAGTTCGCTATGGTGGTTCTGTTCGCGCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTTTCCATCCTTCTTGCAACATTTGCTGGATTCGGTGTGGTAATGAGTGGAAGCTCTATCCTTGTGGAGTTTTTCAGATGGAGAAGGAGATGGCAGGCTTCATCAGAGCAGCAACATGGCCCTATACCGATAACACAAGCAGGACAGCATCCGCACACTGTAAACACGCCACGTTCGGACCAATCCAACCATAGCCATGCCGTGGTTCAAGATCTTCAAAACTCAAATCAGAGCTGA 1572 0.4256 MTSQENKHVTQKEHDADHTTSCTRTVFLPVVHKNDDDPMGITEETAHVPPRKKQNLLLEIPSRTPEECSQEFVAIKMPMTPSPTPTPTPKRVNFLMTSRSVDAPTNNSPGSGSSKGKSTIRNLLPKLSFRYRTPAADTEKANTPTLDVSSSGHREKPSISRSLSLSKIFTPRMKRTSSLPLEEIGHSNPESTHGGNGSVGGSLSKKETRQKIARSLSMPANNNKDKSIRRMDSFFRVVPSTPRVKEINELLSTSPTKDTEDEDADGGEDIAEEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKKEVTNLPVTLLRIQSARNRISGTSRAQLEDINGVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASCQFAMVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRWQASSEQQHGPIPITQAGQHPHTVNTPRSDQSNHSHAVVQDLQNSNQS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01620 523 MobiDBLite consensus disorder prediction 1 20 - -
Trre7g01620 523 PANTHER OS02G0165000 PROTEIN 5 485 - -
Trre7g01620 523 SUPERFAMILY RING/U-box 273 328 - -
Trre7g01620 523 MobiDBLite consensus disorder prediction 483 523 - -
Trre7g01620 523 Pfam RING-variant domain 277 324 IPR011016 GO:0008270
Trre7g01620 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 332 IPR013083 -
Trre7g01620 523 SMART ringv_2 276 325 IPR011016 GO:0008270
Trre7g01620 523 MobiDBLite consensus disorder prediction 1 21 - -
Trre7g01620 523 MobiDBLite consensus disorder prediction 100 225 - -
Trre7g01620 523 MobiDBLite consensus disorder prediction 138 173 - -
Trre7g01620 523 CDD RING_CH-C4HC3_MARCH 277 325 - -
Trre7g01620 523 MobiDBLite consensus disorder prediction 181 205 - -
Trre7g01620 523 ProSiteProfiles Zinc finger RING-CH-type profile. 269 331 IPR011016 GO:0008270
Trre7g01620 523 MobiDBLite consensus disorder prediction 100 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01620 Trre-Chr7 12404806 12408071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01620 260 331 C3H Transcription Factor Family AT2G37950 43.836 5.04e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01620 - - gmx:100788108 723.005