Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01602 ATGAAGGAAACTGAAAAAGGGTACTTAGATCCACAACTATGGCATGCTTGTGCTGGTGGAATGGTTCAGATTCCACAAGTGAACTCTAAAGTTTACTATTTTCCACAAGGTCATGCTGAACATGCTAATACAAACATTGATCTAAGGGTTTCAGTTCCACCACTGATTCTTTGTAAAGTTGTTGCTGTTAAATTCATGGCTGAACCAGAAAGTGATGAAGTTTTTGCTATAATAAAGCTTCTTCCTTTAAGAAATTCAGAGTTTGGTTATGGTGAAGAAACTTGTGGTGGTGATAGTTTGGAAAATTCAGAAAAGCCTGCATCTTTTGCTAAGACTTTGACTCAATCTGATGCAAATAATGGAGGGGGTTTTTCTGTTCCGAGATACTGTGCTGAGACGATCTTTCCTCGCCTTGATTACTCGGCTGAACCGCCTGTTCAGACGGTGGTGGCGAAGGATGTTCACGGTGAGCTTTGGAAGTTTAGGCATATTTATAGAGGGACGCCGCGTAGGCACTTGCTCACAACAGGATGGAGTAGTTTTGTGAACCAGAAGAAACTTGTTGCTGGTGATTCTGTGGTGTTTCTTAGGGCTGAGAATGGTGAATTGTGTGTTGGAATTCGAAGGGCGAAAAAGGGAATTGGTAGTGGTTTTGATGGTTCATCTTGTGGCTGGACTTCTGGTTCGGGTTCTAACAATGGAAATTGTGGAATTGGACCTTTTGGGGCATTTTCTTTCTTCTTGAAAGAGGAGAATAAGGCATTGAGAAATGGTTTTGTCGGTGTTGATGGTAATTTGAGTGGAAGCGTGAGAGTGAGACATGAAGATGTTATGGAAGCTGTGAAATTGGCTGCTAATAACCAACCATTCGAAGTTGTTTACTATCCGAGAGCAAGCACTCCCGAGTTTTGTGTCAAGGCTTCGGCTGTGAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGAATGAGATTCAAGATGCCTTTTGAAACTGAGGACTCTTCTAGGATTAGTTGGTTTATGGGAACCATTGCTTCTGTTCAGGTTGTTGATCCTATTCGCTGGCCTAATTCACCGTGGCGCCTTCTTCAGGTCACATGGGATGAGCCAGATTTACTGCAAAACGTGAAGCGTGTTAGCCCGTGGTTGGTCGAATTAGTTTCAAACGTACCAGTCATTCATTTTTCACCGTTTACTCCACCGAGGAAGAAGCTGCGGTTTCCACAAAACCTAGAATTCCCCCTCGACGTTCAATTTCCGTCACCAACGTTTTCAGGCAACCAGCTCGGGCTAAACAGTCCTTTGTTTGGTTTATCTGATAATGCTCCTGCATGTATACAGGGAGCCAGGCATGCTCAATTTGGAGGAATATCTCTTTCAGATCTCAACCTTAACAACAATAAACTTCAGTTAGGGTTGTTTCCTACTAATATCCAGCACTTTGATGTGCATAATAGGATTTCAAACAGTAACAACAACATGAAGATCGACAACGATAAGAATAAAGAAAGCTTATCATGCTTGTTGACCTTAGGGAAAAAATTTGATAAGAGCTTGGAGAAATCTCAATCTGATGATGATGTTGTTAAGAAACATCAATTTTGTCTTTTTGGCCAACCAATACTCACTGAGCAACAAATTTCTAGAAATTGTTCTGAAAAAGATTTAGTTGATGAGAGTAAGAACAAAGAGAAGTGGTTTTTGGACGCGTTTTCAGCAGGAAAAGGTTCTGATGCTGCTGAGTTTAGTTGGCAACTTGGTTTGGATATTGGTCATTGTAAGGTTTTCTTGGAGTCAGAAGATGTTGGAAGGACACTTGATTTATCACTTCTTGGTTCTTATGAAGAACTCTACAAGAAACTGGCTAACATGTTTGATTTAGAAAAATCTGAGATGTTGAATCGTGTGTTCTACCGCGATGCAACAGGTGCTGTGAAGCAAACTGGTGAAGAACCATTTAGTGAATTCATGAAGACAGCAAAAAGATTGACAATTCTGACAGATTCAGGCAGCAAAAATGTCAGAGGGGCTTGGATTACAGGAACTCACAAGGGTGAACATGGATTGAATGCCTCAAACAAAACAGGTCCTCTAAGCATATTTGCTTAA 2106 0.4126 MKETEKGYLDPQLWHACAGGMVQIPQVNSKVYYFPQGHAEHANTNIDLRVSVPPLILCKVVAVKFMAEPESDEVFAIIKLLPLRNSEFGYGEETCGGDSLENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGELCVGIRRAKKGIGSGFDGSSCGWTSGSGSNNGNCGIGPFGAFSFFLKEENKALRNGFVGVDGNLSGSVRVRHEDVMEAVKLAANNQPFEVVYYPRASTPEFCVKASAVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNVPVIHFSPFTPPRKKLRFPQNLEFPLDVQFPSPTFSGNQLGLNSPLFGLSDNAPACIQGARHAQFGGISLSDLNLNNNKLQLGLFPTNIQHFDVHNRISNSNNNMKIDNDKNKESLSCLLTLGKKFDKSLEKSQSDDDVVKKHQFCLFGQPILTEQQISRNCSEKDLVDESKNKEKWFLDAFSAGKGSDAAEFSWQLGLDIGHCKVFLESEDVGRTLDLSLLGSYEELYKKLANMFDLEKSEMLNRVFYRDATGAVKQTGEEPFSEFMKTAKRLTILTDSGSKNVRGAWITGTHKGEHGLNASNKTGPLSIFA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01602 701 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 668 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre7g01602 701 FunFam Auxin response factor 107 211 - -
Trre7g01602 701 ProSiteProfiles B3 DNA-binding domain profile. 109 211 IPR003340 GO:0003677
Trre7g01602 701 Gene3D - 589 674 - -
Trre7g01602 701 SMART B3_2 109 211 IPR003340 GO:0003677
Trre7g01602 701 CDD B3_DNA 108 209 IPR003340 GO:0003677
Trre7g01602 701 FunFam Auxin response factor 318 391 - -
Trre7g01602 701 Pfam B3 DNA binding domain 109 210 IPR003340 GO:0003677
Trre7g01602 701 Gene3D - 318 391 - -
Trre7g01602 701 ProSiteProfiles PB1 domain profile. 589 669 IPR000270 GO:0005515
Trre7g01602 701 Pfam Auxin response factor 280 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre7g01602 701 SUPERFAMILY DNA-binding pseudobarrel domain 103 210 IPR015300 -
Trre7g01602 701 Gene3D - 107 211 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01602 Trre-Chr7 12200319 12203516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01602 4 673 B3 DNA Binding Superfamily AT4G30080 56.772 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre7g01602 B3 2.9e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01602 - - gmx:100814686 1023.85