Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01601 ATGAAGAGCAATTGGTTTTTCGACAACAATTTTAACGGTGTGTCGGATGAGATTCTTGAAGATGTTGTTGAGTTTTTTGATTTCCCAAATGAAGATGTGGAAACTGATGCTGTGGAACATGATTGGAATCATCAATTCAAGCACCTTGAAGAGCCATCTCTTGGGATTTTTTCGGTACTACCATCATCTGAGCTGTATGGTGAAATTCAAAATGAGAAACCAAATCCTGTGAACGATTTTGCTGCTGCTGCTGAACTTTCTCATATTGACAGCAGAAATATTGTTAATTCAAGCTTCAAAGGTCAACAAGGACCACTAAGAAAGGCCGCTGGACCAACATATAGCAGCAAAACTATTCCTATCCAAATGGTTTCTTTCGATGGAACAAATTTGCGAAAATGCCAAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGTAGTTACTCCTCAGTTGAGAACTTCAACTCTGAGTTACCAGTGGTCCCGGCAAAGCGTCCTCGCAGTAAACGCCAGCGTCTCTCAAGCTTTGACAAGCTCTTCACAATTCCATTCATCTCCACTTCACCTGCTTTTCAAAAATATCATTCGGAGAAACAGCGTGCTGGCAAATCATCAAGCAGAGTCGAAAGAAAGCCGAGGAAAAAAGATATCTCCTCACTCTCTGATGGTATTGAGATGAAGAAATCCTCATTACAGGATTCAGCTACCGCCAGAAAATGTATGCATTGCGAAGTAACTGAGACACCACAATGGAGAGAGGGGCCTAATGGTCCGAAGACCCTATGCAATGCTTGTGGAGTTCGATACAGGTCTGGTCGTCTCTTTCCAGAATACCGGCCTGCAGCTAGCCCAACTTTTGAAGCATCATTGCACTCAAATTCTCACAAGAAGGTCTTAGAAATCAGGAAAAAGGTTAGCTAG 921 0.4235 MKSNWFFDNNFNGVSDEILEDVVEFFDFPNEDVETDAVEHDWNHQFKHLEEPSLGIFSVLPSSELYGEIQNEKPNPVNDFAAAAELSHIDSRNIVNSSFKGQQGPLRKAAGPTYSSKTIPIQMVSFDGTNLRKCQTYSPVSVFESSSYSSVENFNSELPVVPAKRPRSKRQRLSSFDKLFTIPFISTSPAFQKYHSEKQRAGKSSSRVERKPRKKDISSLSDGIEMKKSSLQDSATARKCMHCEVTETPQWREGPNGPKTLCNACGVRYRSGRLFPEYRPAASPTFEASLHSNSHKKVLEIRKKVS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01601 306 SMART GATA_3 234 284 IPR000679 GO:0006355|GO:0043565
Trre7g01601 306 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
Trre7g01601 306 MobiDBLite consensus disorder prediction 193 231 - -
Trre7g01601 306 CDD ZnF_GATA 239 286 IPR000679 GO:0006355|GO:0043565
Trre7g01601 306 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Trre7g01601 306 FunFam GATA transcription factor 230 306 - -
Trre7g01601 306 Gene3D - 230 304 IPR013088 GO:0006355|GO:0008270
Trre7g01601 306 PANTHER GATA TRANSCRIPTION FACTOR 35 305 - -
Trre7g01601 306 MobiDBLite consensus disorder prediction 196 222 - -
Trre7g01601 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 297 - -
Trre7g01601 306 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01601 Trre-Chr7 12184311 12186622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01601 4 304 C2C2-Gata Transcription Factor Family AT1G08010 35.849 2.10e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre7g01601 GATA 5.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01601 - - tpra:123919943 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04289 11 55465920 55466465 Trre7g01601 7 12184311 12186622 PCT