Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01592 ATGGTTTCAGAAGGTGATCTTGAACTAGCTAAACTCAATGGAAAACAAGTATCTTCTAGAGTATTGTCAAGAATGTTCTCAGAAGATTACAAGAGAGTAAGAAGAAGAAGAATATTAGATCCTAGAGGACAAATCATTCACCAATGGAATAAGATTTTCTTAGTAGCATGTTTAGTTTCTTTGTTTGTGGACCCTCTATTCTTTTATTTGCCAATAGTTCAAGATGAAGTGTGCATTGATATTGGAATAAAAATTGAAGTTGTCCTCATAATTATAAGATCAATTTTGGATGTCTTTTATATCATTCACATTTTTATGAGGTTTCATATAGCTTATGTTGCTCCTTCTTCTAGGGTGTTTGGAAGAGGAGAACTTGTTATAGACTCTTCTAAGATAGCTACTAGGTACTTGCATAAGGGCTTTTTCTTGGATTTTATTGCTGCCCTGCCCCTTCCTCAGGTGTTAATTTGGATTGTCATACCTAATCTTGGAGGTTCAACCATTGCAAATACAAAAAATGTCCTTAGATTCATCATCATATTCCAATATTTGCCAAGGCTATTTCTCATTTTTCCACTTTCATCACAAATTGTAAAAGCTACTGGTGTTGTGACAGAAACCGCATGGGCAGGAGCTGCTTATAACTTGATGCTTTACATGTTGGCTAGTCATGTTTTAGGAGCATGTTGGTATCTTCTATCAATTGAAAGACAAGAAGCATGTTGGAAGAGTGTCTGCGAAATGGAGGAGTCGTCTTGTAAATATGATTTTTTTGACTGCAACATGGTTAAAGATTCTGTCAGGGCGTCGTGGTTTATAACAAGTAATGTCACAAACTTATGTTCACCAAATGGTCACTTTTATCAGTTTGGTATATATGGTGATGCAGTGACATCCAAAGTTACAACCTCTGCATTCTTTAATAAGTACTTCTTTTGTCTTTGGTGGGGCCTAAGGAATTTGAGTTCATTGGGACAAAGTCTTCTTACTAGTACTTTTGTTGGAGAAATAATGTTTGCCATTGTTATTGCAACACTTGGATTGGTTCTTTTCGGGTTGCTCATTGGTAATATGCAGACATACCTACAATCAACGACTGTCCGGTTAGAAGAGTGGAGGGTCAAAAGAACAGACACAGAACAATGGATGCATCATAGACAGCTACCTCAAGAACTAAAACAATCCGTGCGTAAATATGATCAATATAAATGGCTAGCTACACGAGGAGTAGATGAAGAATCTCTTCTAAAAGGACTTCCATTGGATCTTCGAAGAGACATTAAGCGTCACCTTTGCCTTGAACTAGTTCGAAGAGTTCCATTGTTTGACACAATGGATGAGAGGATGCTTGACGCGATATGTGAAAGACTAAAGCCAGCACTATGCACAGAGAACACATATCTAGTTCGCGAAGGCGATCCTGTAAACGAGATGCTATTCATAATAAGAGGACATCTTGATTCCTACACAACCAATGGAGGCCGAACTGGTTTCTTCAACTCATGTCGTATTGGTCCAGGTGATTTTTGTGGCGAGGAGCTTTTGACATGGGCATTGGATCCACGACCAAGTATGGTAATTCCTTCTTCAACTCGAACGGTTAAAGCCATATCCGAAGTAGAAGGCTTTGCACTTATAGCAGAAGATTTAAAGTTTGTTGCATCTCAGTTTAGAAGGTTGCATAGCAAGCAATTGAGGAACAAGTTAAGGTTTCACTCGCACCAATGGAGAACATGGGCTGCTTGTTTTATACAAGTTGCATGGAGACGTAAGGTACAAGAAAAGAAAGGGAGTTATCGAGTTTGA 1806 0.3832 MVSEGDLELAKLNGKQVSSRVLSRMFSEDYKRVRRRRILDPRGQIIHQWNKIFLVACLVSLFVDPLFFYLPIVQDEVCIDIGIKIEVVLIIIRSILDVFYIIHIFMRFHIAYVAPSSRVFGRGELVIDSSKIATRYLHKGFFLDFIAALPLPQVLIWIVIPNLGGSTIANTKNVLRFIIIFQYLPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHVLGACWYLLSIERQEACWKSVCEMEESSCKYDFFDCNMVKDSVRASWFITSNVTNLCSPNGHFYQFGIYGDAVTSKVTTSAFFNKYFFCLWWGLRNLSSLGQSLLTSTFVGEIMFAIVIATLGLVLFGLLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPQELKQSVRKYDQYKWLATRGVDEESLLKGLPLDLRRDIKRHLCLELVRRVPLFDTMDERMLDAICERLKPALCTENTYLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSMVIPSSTRTVKAISEVEGFALIAEDLKFVASQFRRLHSKQLRNKLRFHSHQWRTWAACFIQVAWRRKVQEKKGSYRV 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01592 601 Gene3D - 51 365 - -
Trre7g01592 601 ProSiteProfiles cAMP/cGMP binding motif profile. 441 538 IPR000595 -
Trre7g01592 601 PRINTS EAG/ELK/ERG potassium channel family signature 310 327 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre7g01592 601 PRINTS EAG/ELK/ERG potassium channel family signature 336 347 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre7g01592 601 PRINTS EAG/ELK/ERG potassium channel family signature 93 103 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre7g01592 601 PRINTS EAG/ELK/ERG potassium channel family signature 221 231 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre7g01592 601 PRINTS EAG/ELK/ERG potassium channel family signature 354 363 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre7g01592 601 PRINTS EAG/ELK/ERG potassium channel family signature 104 113 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre7g01592 601 PRINTS EAG/ELK/ERG potassium channel family signature 404 411 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre7g01592 601 Gene3D Jelly Rolls 439 559 IPR014710 -
Trre7g01592 601 FunFam Cyclic nucleotide-gated ion channel 1 439 557 - -
Trre7g01592 601 Gene3D Helix hairpin bin 368 432 - -
Trre7g01592 601 SUPERFAMILY cAMP-binding domain-like 371 569 IPR018490 -
Trre7g01592 601 Pfam Ion transport protein 49 368 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre7g01592 601 SUPERFAMILY Voltage-gated potassium channels 40 363 - -
Trre7g01592 601 FunFam Cyclic nucleotide-gated ion channel 1 368 432 - -
Trre7g01592 601 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 30 594 - -
Trre7g01592 601 SMART cnmp_10 441 572 IPR000595 -
Trre7g01592 601 CDD CAP_ED 441 572 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01592 Trre-Chr7 12085289 12088385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01592 13 595 Ion Channels AT2G28260 77.187 0.0 970
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01592 K05391 - gmx:100791992 1016.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04302 11 55573933 55577083 Trre7g01592 7 12085289 12088385 PCT