Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01583 ATGCAACAAGAATTTGCTAACAACAATATAGAAGAATTATTATCACTACATCAACCACCACAAGGATTCAATAACATGGATCTTCTTCAACTCAGAAATGCTAACAACAACAACAACATGCTTAATGATGATGAATCAGGTCATTATCCATCTAATCAAATCTTTTCAACAACATCAAATCCTTTACATAGAAACCCTTTGGATTATGAGCTAGCTATTGCTGAACCAAGTAGTAGTAACATTAATAGACTCAATTATTATTATCATCCAAATGAAACCAATATTATTCCAAACTCTTTCTTAACTTCTCATGAACAACAACAACAACTTAACAGTACTAATGATGTTTTCAAGTCTCCAACTTCTTCAGAAATGGCTTCTTTAATGCACCATCATCATAGCATTTGGGGAGGTGTAAATAGTCATAATACTAATGCTAATAGTATTGTGCCTATATTTCATGAAAATCAACATCAATGGACAAACAACAACATGGGTTCTTTTTTTAGTGATTATAATCCACAAGGTTTATCTTTATCACTTTCATCAAATTCACAATCAAAACAACCTTCATCATCTACTTCAAATTTTGAACAAGGTTCATTAAATATTGTGAAACCATCTTTAGTTTCAAGAGATTGTGTGAAACCAATTCATCAAGAACAACAACAACAACAACCTAGTAGTAGTAGTAGTGGTTTTAGAAATGTTGGTCCTCTAGGACCATTTACTGGGTATGCAACAATTTTGAAAAGTTCAAGGTTTTTAAAACCATGTCAAGAGTTGTTAGAAGAATGTTGTTGTGATAAAAATGTTGTTCCAAAGTGGGTTTCTCGAGATGTTATTGGTGTTGATGATGAAAGTGGGGGTGTTGTTTCTGCAAAAGGTAGTACTAGTAATTCAGGTGGTACTTCATCTTGTTCTATGTTGTATGGTTCAAAAGAGAAAGAGAACAGTAATGGTGATGGAGGAATTGGGAATAATTTTTGTCTTTCTTCTTCTTCTTCTTCTACTTCTCGACCAGAGTGCCAAAAGAATAAGGCTCAATTACTGTTCATGCACGAAGAGGTGACAAGAAGATACAAGCAATACCATCAACAAATGCAAATGGTGGTAACATCATTTGAGTCAGTAGCAGGTCTTAGTTCAGCTACACCATACATTTCATTGGCTCTAAAGTCACTATCAAAACACTTCAAATGCCTTAAAAATGCTATCACAGATCAACTCAAGTTTACATGTCAAGTATTGGGAGAGGATTTTTCAATACTACCAACCACCACAAGTAGTAGTAGTAAATTTGATAGCAACAATAATAACATGACAAGGCTAAGGTGCATGAGTCAAAGTTTTCAAAAGAACAAATCTGGTGGGAATAGTAATGTTGACTTTGTTGAACCTCAACAACATGTTTGGAGGCCCCAGAGAGGTTTGCCAGAACGTTCAGTGGCGATTCTTAAAGCGTGGTTGTTTGAACATTTTCTTCACCCGTACCCCACGGACACTGATAAACACATGTTGGCTAGTCAAACAGGTCTATCAAGAAACCAGGTATCAAATTGGTTCATAAATGCTAGAGTCCGTGTATGGAAACCAATGGTTGAGGAAATACACATGCTTGAATCAAAAGGAACAACAGAAGTTCAGAATCAGAACAATAGTAAAAATGAAGCATCCAATGTTAGAGCACATGAAAAACAATTTCAGTGTTTGGAAGTTGGGTCATCTTCAGGAATTAACAATGTTGAAAATGTAAGACATGAAGAGCAATGGAATAATATTCAAGAGAAGAGGTCTAAATTGGAAAATGATCAAATTACACCAAATATGGATACAACAGTGATGGGTTTTATGCCGTATCAACGCGGATCGGTATCGCTGACTTTGGGTTTGAGACACGGCGTTGAAAATGCACAACACCAACAACAGCAGTTGCAACAAGAGGTGGAGCTTAGACATCAATATGGAGGGCACATGTTCCATGATTTTGTGGGTTAA 1998 0.3569 MQQEFANNNIEELLSLHQPPQGFNNMDLLQLRNANNNNNMLNDDESGHYPSNQIFSTTSNPLHRNPLDYELAIAEPSSSNINRLNYYYHPNETNIIPNSFLTSHEQQQQLNSTNDVFKSPTSSEMASLMHHHHSIWGGVNSHNTNANSIVPIFHENQHQWTNNNMGSFFSDYNPQGLSLSLSSNSQSKQPSSSTSNFEQGSLNIVKPSLVSRDCVKPIHQEQQQQQPSSSSSGFRNVGPLGPFTGYATILKSSRFLKPCQELLEECCCDKNVVPKWVSRDVIGVDDESGGVVSAKGSTSNSGGTSSCSMLYGSKEKENSNGDGGIGNNFCLSSSSSSTSRPECQKNKAQLLFMHEEVTRRYKQYHQQMQMVVTSFESVAGLSSATPYISLALKSLSKHFKCLKNAITDQLKFTCQVLGEDFSILPTTTSSSSKFDSNNNNMTRLRCMSQSFQKNKSGGNSNVDFVEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWKPMVEEIHMLESKGTTEVQNQNNSKNEASNVRAHEKQFQCLEVGSSSGINNVENVRHEEQWNNIQEKRSKLENDQITPNMDTTVMGFMPYQRGSVSLTLGLRHGVENAQHQQQQLQQEVELRHQYGGHMFHDFVG 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01583 665 Gene3D - 475 537 - -
Trre7g01583 665 FunFam BEL1-like homeodomain protein 9 475 537 - -
Trre7g01583 665 SMART prehox3 244 408 IPR006563 -
Trre7g01583 665 SMART HOX_1 472 536 IPR001356 GO:0003677
Trre7g01583 665 MobiDBLite consensus disorder prediction 180 199 - -
Trre7g01583 665 Pfam Homeobox KN domain 489 528 IPR008422 GO:0003677|GO:0006355
Trre7g01583 665 Pfam Associated with HOX 249 407 IPR006563 -
Trre7g01583 665 SUPERFAMILY Homeodomain-like 474 538 IPR009057 -
Trre7g01583 665 Coils Coil 584 604 - -
Trre7g01583 665 ProSiteProfiles 'Homeobox' domain profile. 469 532 IPR001356 GO:0003677
Trre7g01583 665 CDD homeodomain 472 533 IPR001356 GO:0003677
Trre7g01583 665 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 165 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01583 Trre-Chr7 11995086 12002505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01583 172 542 Homeobox Transcription Factor Family AT5G02030 42.049 2.20e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre7g01583 POX 5.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01583 - - tpra:123919922 1052.74