Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01576 ATGAACAAAAGAGATAAAATAAAGAAACATGATTTTGTTGTTACAATAATTGTTGTATTGTTCAGTTGCACTGTTGGACCACAACTAGTTTCTTGTCAGAAAAAAACTGCTGCTGCTGCTGCTGGTGGCGGTGCCGGTGGCAGTGGTGGTGGTTCAGGTGCTGGTCTTGAGGATATATTCGCGAAAGAATTGTATCGTGGCATGTCAAGTTATACAAATGTTTTCAAAGCTGCAATAAAAAAAGAGTTGGGTTATTGCATACTTGATGTGGATGCTGATTGGGATGGTGCCTTTAATTTCACCAAAGATCTCACATTTTTGTCCATGTGTGCCCAAGAAATGAAAGGAGATATTACACAAAGGATGTGCACATCAGGAGAAATAGAAGCCTATGCTAGAAGTTTTGCTGCAGGAAACAAGTCTGCAGGCTCGGGAAGAACCAAAGCAAACTTCTTGAAGCCGAACAAAAACTGTAATTTGAGTTCTTGGGTTAATGGATGTGAACCTGGTTGGGGATGCAAAGCTAATGAGAAAGTTGATGTTAATAGTAATAAGAAGGAAATACCTGTTAGATCTGCTGATTGCAAACCTTGTTGTGAAGGTTTCTTTTGTCCTCGCGGCATCACCTGCATGATCCCTTGTCCTTTGGGATCTTATTGTCCGCGTGGGGAACTAAATAAAACTAGCGGAATATGTGCACCATATCGTTATCAGTTACCTCCTGGAAAAGCTAACCATAGTTGTGGAGGAGCAGATATTTGGGCGGATATTACAAGTAGTAGCGAGGTATTCTGTTCAGCAGGATCATATTGTCCATCTACAATCGTAAAAAATCCTTGCAGTAGAGGGTATTACTGCAGAAAAGGTTCTACATCTCAAGAGAGATGTTTCAGGCTAGCAAGCTGTGAGCCTAAATCAGCAAATCAGAATATTACAGCATATGGTCTCTTGGTTTTTGCCGGCTTATGTTTTATGTTGATTATCATATACAACTGTTCTGATCAAGTTCTCGCAACTCGAGAAAGAAGACAAGCGAAATCAAGAGAAAGGGCTGCTGCAAGTGTAAGAGAAACACAAGCGCGCGAAAAATGGAAATCTGCAAAAGACATTGCTAAGAAGCATGCAGTAGGATTACAATCACAATTATCGCGTACATTTTCGCGCAAAAAAACATCGAAAATGCCAGATTTTAAAGGTGCGTTACCACCTATGGGACCTGGTGCATCAAAAAAGAAAAAGGATAAAAACAACCTCTCAAAAATAATAAGTGATATCGAGCAAGATCCTGATAGTCAAGAAGGGTTCAATGTGGAAATAGGAGATAAAAATGTGAAAAAACAAGCACCAAGGGGTAAAGCTTTGCATACTAATAGTCAAATTTTCAAGTATGCATATGGTCAGATTGAAAAAGAAAAGGCATTACAGGAACAAAATAAGAACTTGACATTCTCCGGAGTGATTTCAATGGCTAGTGACATTGATATAAGGAAAAGGCCTACAATTGAGGTTGCTTTTAAAGACTTAACACTAACTTTGAAAGGGAAAAATAAACATCTATTAAGATGTGTGACCGGTAAGTTACATCCTGGCCGAGTTTCTGCTGTCATGGGTCCATCTGGGGCTGGTAAGACAACATTTCTTTCTGCTTTAACTGGTAAAGCAGCTGGATGCCACACAACTGGTCAAGTTCTTGTAAATGGTCAGGAATCGTCTATTCAATCATTCAAGAGGATCATCGGCTTTGTTCCACAAGATGATATTGTACATGGAAATTTGACAGTGGAGGAGAATCTGTGGTTTAGTGCCAGATGCAGACTCTCGGCCGATCTACCGAAAGAAGAGAAGGTGTTAGTGGTTGAAAGAGTCATTGAATCCTTGGGTCTGCAGGCAATAAGAGATTCTTTGGTTGGGACAGTGGAGAAACGAGGAATCTCTGGAGGTCAAAGGAAGAGAGTAAATGTCGGACTAGAAATGGTTATGGAACCTTCCCTTCTAATTTTGGATGAACCTACATCTGGTTTGGACAGTTCATCTTCTCAATTACTGCTTAGAGCACTTAGACGCGAGGCTCTTGAAGGCGTAAACATATGCATGGTCCTTCACCAACCGAGCTACACATTGTTCAAGATGTTTGATGATTTTATACTGCTAGCTAAAGGAGGCCTTACAGTGTATCATGGACCTGTTAGCAAAGTGGAAGAGTACTTCTCTGGCATAGGGATTGTTGTCCCTGACCGCGTAAACCCTCCAGATTACTACATTGACATTTTAGAAGGAATAATAAAACCAAGTGCAAGCTCAGGAGTGACCCATAAACAACTACCAGTTAGATGGATGCTTCATAATGGATATCCTGTGCCTATGGATATGCTGCAACTTGTAGAAGGAATGTCTACTCCAAGTGGTAGCATTCCAGCACAAGCACCTAACCCTAATGCAAAGCTTACTGCCGCGCCTTCTTTTGCCGGAGAACTTTGGCAGGATGTGAAGTGCAACGTTGAGATGAAGAGAGACAACCTTCAACTCAATTTCTTAGCTTCAAATGATTTAGTTGGTAAGCAGCGGTTGCGAGAAGCTAGAACACAAGCTGTAGATTTTCTGATTCTGTTGCTAGCTGGTGTTTGCTTAGGAACACTTGCTAAAGTGAGCGATGAATCATTTGGAGCAACTGGTTATACATACACCGTAATTGCAGTATCACTCCTTTCCAAGATTGCAGCTTTGAGATCGTTCTCATTGGATAAGTTGCATTACTGGAGAGAAAGCGCGTCAGGGATGAGTAGCCTTGCTTACTTTCTCTCAAAAGATACAGTTGACCATTTCAGCACACTTATCAAACCTCTAGTTTACCTCTCCATGTTCTATTTCTTCAACAATCCAAGATCATCTTTTACAGATAACTACTTTGTTCTACTATGTTTGGTGTATTGTGTCACCGGCATCGCTTATGTGTTGGCAATCTTCCTTCAACCAGGTCCAGCCCAGCTGTGGTCGGTGTTACTACCAGTAGTTTTGACTCTCCTAGCAACTTACGAAAATGAAGAGGATAGCAGTTATGTCGCTTTTCTATCTGATTTGTGCTACACAAAATGGGCTCTTGAAGCATTTGTTATATCAAATGCTAAAAGATATTCTGGTGTTTGGCTAATAAGCCGATGTGGTGCACTCCACTCATACGGCTATGATCTCAAACATTGGTACCAATGTTTAGGACTCCTTGTTGTAACAGGAATAATTAGTCGCATGCTTGCATTTTTTTGCTACATATGCAAGACTCTGGCTGGTGCTACAACCATGAGTCATGATCAGTGCTCACCAACTAGTAAAGCAATGTGA 3336 0.4095 MNKRDKIKKHDFVVTIIVVLFSCTVGPQLVSCQKKTAAAAAGGGAGGSGGGSGAGLEDIFAKELYRGMSSYTNVFKAAIKKELGYCILDVDADWDGAFNFTKDLTFLSMCAQEMKGDITQRMCTSGEIEAYARSFAAGNKSAGSGRTKANFLKPNKNCNLSSWVNGCEPGWGCKANEKVDVNSNKKEIPVRSADCKPCCEGFFCPRGITCMIPCPLGSYCPRGELNKTSGICAPYRYQLPPGKANHSCGGADIWADITSSSEVFCSAGSYCPSTIVKNPCSRGYYCRKGSTSQERCFRLASCEPKSANQNITAYGLLVFAGLCFMLIIIYNCSDQVLATRERRQAKSRERAAASVRETQAREKWKSAKDIAKKHAVGLQSQLSRTFSRKKTSKMPDFKGALPPMGPGASKKKKDKNNLSKIISDIEQDPDSQEGFNVEIGDKNVKKQAPRGKALHTNSQIFKYAYGQIEKEKALQEQNKNLTFSGVISMASDIDIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLHPGRVSAVMGPSGAGKTTFLSALTGKAAGCHTTGQVLVNGQESSIQSFKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVSKVEEYFSGIGIVVPDRVNPPDYYIDILEGIIKPSASSGVTHKQLPVRWMLHNGYPVPMDMLQLVEGMSTPSGSIPAQAPNPNAKLTAAPSFAGELWQDVKCNVEMKRDNLQLNFLASNDLVGKQRLREARTQAVDFLILLLAGVCLGTLAKVSDESFGATGYTYTVIAVSLLSKIAALRSFSLDKLHYWRESASGMSSLAYFLSKDTVDHFSTLIKPLVYLSMFYFFNNPRSSFTDNYFVLLCLVYCVTGIAYVLAIFLQPGPAQLWSVLLPVVLTLLATYENEEDSSYVAFLSDLCYTKWALEAFVISNAKRYSGVWLISRCGALHSYGYDLKHWYQCLGLLVVTGIISRMLAFFCYICKTLAGATTMSHDQCSPTSKAM 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01576 1111 SMART AAA_5 529 730 IPR003593 GO:0016887
Trre7g01576 1111 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Trre7g01576 1111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 737 IPR027417 -
Trre7g01576 1111 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 268 1081 - -
Trre7g01576 1111 CDD ABCG_EPDR 501 727 - -
Trre7g01576 1111 Gene3D - 493 738 IPR027417 -
Trre7g01576 1111 FunFam ABC transporter G family member 24 497 739 - -
Trre7g01576 1111 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 503 744 IPR003439 GO:0005524
Trre7g01576 1111 Pfam ABC-2 type transporter 701 1090 IPR043926 GO:0140359
Trre7g01576 1111 MobiDBLite consensus disorder prediction 384 416 - -
Trre7g01576 1111 ProSitePatterns ABC transporters family signature. 644 658 IPR017871 GO:0005524|GO:0016887
Trre7g01576 1111 Pfam ABC transporter 523 672 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01576 Trre-Chr7 11935075 11940950 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01576 530 725 Calmodulin-binding Proteins AT2G36910 27.442 6.39e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01576 - - gmx:100794093 1796.17