LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g01571	ATGGCTGATATTGAAGGTTCACCAGGAAGCTCCATGCATGGAGTAACTGGAAGAGAACAAACCTTCATTTCATCAGTTGCTTCTCCAATGGTTCCAACTGACACAACTGCCAAATTTGCATTACCAGTTGATACAGAACACAAATCCAAAGTTTTCAAACTCTTTTCACTAGCCAACCCTCACATGAGAACCTTCCATTTATCATGGATATCTTTCTTCACCTGTTTCGTCTCCACTTTCGCTGCTGCGCCTCTTGTCCCTATCATCCGCGACAATCTTAACCTCACGAAAGCGGATGTAGGTAACGCCGGTGTTGCATCGGTTTCGGGTAGTATTTTGTCAAGGTTAACAATGGGTGCAGTTTGTGACTTATTAGGTCCACGTTATGGTTGTGCATTCCTTATAATGCTAACAGCACCGACAGTGTTTTGTATGTCATTTGTTGAAGATGCTGCTGGTTACATAGCAGTTAGGTTTATGATTGGTTTTTCATTGGCAACATTTGTATCATGTCAATATTGGATGAGTACTATGTTTAATAGTAAGATTATTGGACTTGTTAATGGCACTGCTGCTGGTTGGGGTAATATGGGTGGTGGGGCCACTCAACTTATTATGCCTTTGGTTTATGAGTTAATTAGAAGAGCTGGTGCTACTCCTTTCACTGCTTGGAGAATTGCCTTTTTTATCCCTGGTTGGTTACATGTTATCATGGGTATTTTGGTCTTAACATTAGGCCAAGATTTACCTGATGGTAATCTTGGTGCTTTACAGAAGAAGGGTAATGTTGCTAAAGACAAATTCACAAAGGTTTTATGGTATGCTATAACAAATTACAGGACATGGATTTTTGCCCTGCTTTATGGTTACTCTATGGGTGTTGAATTGACCACTGATAATGTCATTGCTGAGTATTTCTATGACAGATTTGACCTAAAGCTACACACAGCTGGAATCATCGCAGCTTCATTCGGAATGGCAAACCTAATCGCTCGCCCATTTGGCGGATATGCATCAGATTTTGCAGCAAGGTTATTTGGGATGAGAGGAAGGTTATGGACACTATGGATTCTCCAAACACTTGGAGGAGTATTCTGCATATGGTTAGGACGCGCAAATACACTTCCGATTGCAGTACTATCGATGATCCTGTTCTCAATTGGAGCACAAGCAGCATGTGGTGCAACATATGGAATCATTCCATTCATATCAAGAAGATCTTTAGGAATCATATCAGGTATAACTGGTGCAGGTGGTAACTTTGGTTCTGGATTAACACAGTTAGTGTTTTTCTCAAGCTCGAAATTCTCAACATCAACTGGTCTTTCTTTAATGGGTGCAATGATTGTAGCTTGCACATTACCTGTTAGTCTTGTACATTTTCCACAATGGGGTAGCATGTTCTTTCCACCTTCAAAAGAGATCAATGAAGAACATTATTACACTTCTGAATGGAATGAAGATGAGGTACAGAAAGGGTTGCATCAATCAAGTCTTAAGTTTGCTGAGAATAGTAGATCTGAGAGAGGTAAACGTGTAGCTTCTGCTGCAACTCCACCAAATACAACTCCAAGCCATTAA	1581	0.4054	MADIEGSPGSSMHGVTGREQTFISSVASPMVPTDTTAKFALPVDTEHKSKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKADVGNAGVASVSGSILSRLTMGAVCDLLGPRYGCAFLIMLTAPTVFCMSFVEDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSKIIGLVNGTAAGWGNMGGGATQLIMPLVYELIRRAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVAKDKFTKVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYFYDRFDLKLHTAGIIAASFGMANLIARPFGGYASDFAARLFGMRGRLWTLWILQTLGGVFCIWLGRANTLPIAVLSMILFSIGAQAACGATYGIIPFISRRSLGIISGITGAGGNFGSGLTQLVFFSSSKFSTSTGLSLMGAMIVACTLPVSLVHFPQWGSMFFPPSKEINEEHYYTSEWNEDEVQKGLHQSSLKFAENSRSERGKRVASAATPPNTTPSH	526

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g01571	526	PANTHER	HIGH-AFFINITY NITRATE TRANSPORTER 2.3	1	513	IPR044772	GO:0015112
	Trre7g01571	526	FunFam	High affinity nitrate transporter	57	254	-	-
	Trre7g01571	526	SUPERFAMILY	MFS general substrate transporter	59	459	IPR036259	-
	Trre7g01571	526	Gene3D	MFS general substrate transporter like domains	58	253	IPR036259	-
	Trre7g01571	526	MobiDBLite	consensus disorder prediction	501	526	-	-
	Trre7g01571	526	CDD	MFS_NRT2_like	65	458	IPR044772	GO:0015112
	Trre7g01571	526	Gene3D	MFS general substrate transporter like domains	264	464	IPR036259	-
	Trre7g01571	526	ProSiteProfiles	Major facilitator superfamily (MFS) profile.	64	458	IPR020846	GO:0022857
	Trre7g01571	526	Pfam	Major Facilitator Superfamily	69	425	IPR011701	GO:0022857\|GO:0055085
	Trre7g01571	526	FunFam	Nitrate transporter 2.1	265	466	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g01571	Trre-Chr7	11888681	11890635	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g01571	1	526	Inorganic Solute Cotransporters	AT1G08090	79.017	0.0	884

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g01571	K02575		-	gmx:100807710	985.326