Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01562 ATGTTGAGTACTCATACACATTTTATAAACATGAGACTAGAAATCAAAAGGGTTATTGTAGGTGGAATTTTGAAGCTCAAGAATAATATTGTGTTCAAAAAGCTTCAAAAGACAATCTTAAAGGGAAGAAATGATGATAAATCAAAGTGTGTAACTGAGGATGTGAAAAAAGGACATTTTGTTGTGATTGCTGAGGATGAAGAGGAAACAAAGAGATTTGTTGTGCCATTGAGATGTTTAACAAATCCAATATTTATGAGGTTATTGGAACAAGCAGCTGAAAAATATGGATTTCATGGAGATGGTGCATTGGTTGTTCCTTGTAGGCCTAATGAGCTTCAAATGTTCTTGGTACAGCAAAGGCATGAAGAACGAAGCTTTTGTTCTAATCAAGTCATGTTTAAATGCTACCAAAGTGGGCCTAGTGTACATTTCAATTTAAAGCAAATTATATATAGAGGTTATTAG 468 0.3355 MLSTHTHFINMRLEIKRVIVGGILKLKNNIVFKKLQKTILKGRNDDKSKCVTEDVKKGHFVVIAEDEEETKRFVVPLRCLTNPIFMRLLEQAAEKYGFHGDGALVVPCRPNELQMFLVQQRHEERSFCSNQVMFKCYQSGPSVHFNLKQIIYRGY 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01562 155 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 44 115 IPR003676 GO:0009733
Trre7g01562 155 Pfam Auxin responsive protein 44 113 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01562 Trre-Chr7 11792524 11792991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01562 20 108 Calmodulin-binding Proteins AT4G34750 33.708 1.13e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01562 - K14488 mtr:25492408 166.007