Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01561 ATGGTTTCTGACGCTAGTAAGAAGAAAGCTGCTCAAAAGAAAGCCGCCGCCGCCGCTAAACGTGGTGGTAAAGCCGCCGTTGCAGCTGCTTCTTCTAAAGCCGCTGATAAGGTTGCTGATAAAATTGCCGATATGCGGATATCTGATCGGACTTGTACTGGTGTTCTCTGTTCTCATCCTCTTTCTAGAGATATTCGGATAGAGTCTCTATCAGTTACTTTTCACGGACATGATCTCATAGTTGATTCTGAATTGGAGCTAAATTATGGGAGACGTTATGGTTTACTTGGATTAAATGGTTGTGGAAAGTCCACTCTACTTACCGCAATAGGAATGCGGGAACTTCCAATTCCTGAACACATGGATATTCATCACCTTAGCAGAGAAATTGATGCCTCTGACATGTCTGCTTTGGAAGCTGTCATAAGCTGTGATGAAGAAAGGTTGAGATTGGAGCATGAAGCTGAAACTTTGGCAGCTCAGGATGACGGAGGTGGCGAAGCCCTCGAACGTATTTATGAACGATTGGACGCCCTAGATGCAGCAACTGCAGAAAAGCGTGCTGCTGAAATCTTACATGGTCTTGGTTTTGACAAGGCAATGCAGGCAAAGAAGACACGTGATTTTTCTGGAGGCTGGAGAATGAGAATTGCATTAGCAAGAGCTTTATTTATGAATCCTACTGTTCTTCTACTTGATGAACCAACCAATCATCTCGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTATTTTGGTTGTTATATCACATTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAGTAAGAAACTGAAGATGTACACTGGTAATTATGATCAATATGTTCAGACTCGTGGTGACTTAGAAGAGAACCAGATGAAGCAGTACAAGTGGGAGCAGGAGCAGATTGCCAACATGAAGGAATATATTGCTCGATTTGGTCATGGTTCAGCAAAACTAGCTCGCCAGGCACAGAGTAAGGAAAAAACACTGGCAAAAATGGAACGAGGTGGACTTACCGAGAAGGTGGTTAGAGATCAAGTTTTAGTATTTCGCTTTACTGATGTGGGAAAACTTCCCCCACCTGTTCTCCAGTTTTCTGAAGTAAGTTTTGGTTACACTCCTGATAATCTCATCTACAAAAACATTGACTTTGGTGTTGACTTAGACTCTAGGATTGCTTTGGTCGGACCAAATGGTGCTGGAAAGAGCACACTGCTGAAGCTAATGACAGGTGATTTGTTTCCTAGTGATGGCATGGTCAAGCGTCATAATCATCTTCGAATTGCACAATATCATCAGCACTTGGCTGAAAAGTTAGACTTGGATGTTCCTGCCCTTCAGTTTATGATGAATGAATACCCTGGTAATGAGGAAGAGAAGATGAGGGCTGCTATTGGGAGGTTTGGACTGACAGGTAAAGCCCAGGTGATGCCTATGAAGAATTTGTCTGATGGGCAAAAGAGTAGAGTGATATTTGCGTGGTTAGCTTGGAGGCAGCCTCAATTGCTACTTTTGGATGAGCCAACTAATCATTTGGATATCGAAACTATTGACTCACTGGCTGAGGCATTGAATGAGTGGGATGGCGGCTTGGTGCTTGTTAGTCACGATTTTAGGCTCATTAATCAGGTGGCACATGAAATATGGGTGTGTGCTGATCAAAAGGTGACCAGATGGGAGGGTGACATTATGGATTTCAAGAAGCATCTAAAGGCAAAGGCAGGGATAGTGGACTGA 1776 0.4336 MVSDASKKKAAQKKAAAAAKRGGKAAVAAASSKAADKVADKIADMRISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGMRELPIPEHMDIHHLSREIDASDMSALEAVISCDEERLRLEHEAETLAAQDDGGGEALERIYERLDALDAATAEKRAAEILHGLGFDKAMQAKKTRDFSGGWRMRIALARALFMNPTVLLLDEPTNHLDLEACVWLEESLKKFERILVVISHSQDFLNGVCTNIIHMQSKKLKMYTGNYDQYVQTRGDLEENQMKQYKWEQEQIANMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDQVLVFRFTDVGKLPPPVLQFSEVSFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLFPSDGMVKRHNHLRIAQYHQHLAEKLDLDVPALQFMMNEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQKSRVIFAWLAWRQPQLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCADQKVTRWEGDIMDFKKHLKAKAGIVD 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01561 591 ProSitePatterns ABC transporters family signature. 209 223 IPR017871 GO:0005524|GO:0016887
Trre7g01561 591 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 65 305 IPR003439 GO:0005524
Trre7g01561 591 SMART AAA_5 401 567 IPR003593 GO:0016887
Trre7g01561 591 SMART AAA_5 89 291 IPR003593 GO:0016887
Trre7g01561 591 Gene3D - 341 588 IPR027417 -
Trre7g01561 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 298 IPR027417 -
Trre7g01561 591 Pfam ABC transporter 83 237 IPR003439 GO:0005524
Trre7g01561 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 571 IPR027417 -
Trre7g01561 591 CDD ABCF_EF-3 65 282 - -
Trre7g01561 591 CDD ABCF_EF-3 376 568 - -
Trre7g01561 591 Pfam ABC transporter 392 523 IPR003439 GO:0005524
Trre7g01561 591 Gene3D - 65 329 IPR027417 -
Trre7g01561 591 Pfam ABC transporter 276 348 IPR032781 -
Trre7g01561 591 FunFam Abc transporter f family member 1 65 329 - -
Trre7g01561 591 FunFam ATP-binding cassette sub-family F member 3 336 589 - -
Trre7g01561 591 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 15 586 - -
Trre7g01561 591 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 376 591 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01561 Trre-Chr7 11785800 11789792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01561 376 569 Calmodulin-binding Proteins AT2G36910 26.106 9.32e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01561 K06185 - gmx:100809491 1034.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04332 11 55852971 55862616 Trre7g01561 7 11785800 11789792 PCT