Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01540 ATGTCAAAGCCACCACCCTCCGCCTTCGACTTCCTCATGTCCGGCGCACGCGCCGCCGCCGCCGCCAAGAAGAAACCTCCTCCTTCTTCTTCCTCATCTCCCAAGAAACGAAAATCCCCTCCCCCTTCTCCTTCTCCATCTCCACTCCCCCCTCCCGCTCTAAACCCTAACAACAATCTCAAAACCCTAGAAACCGTTGAAACTGTTGAACCACCGAACAAGATCCGCAACACTTCATCTTCTTCTTCCAAGGGGATAATTACCGAATTGAAGGAGCTAATTCCACAGCTGAAGAAGAAACCACCGAGTTTCGATCCAAGTACTGTTGTTTGCTGGGAGAAAAACAAACCTGTGCCATTTTTGTTCCTTTGTTTAGCCTTCGATATGATTAACGAAGAGAGTGGGAGGATTGTGAAAACTGACATTGTGTGCAATCTGTTGAGGACGGTCATATACACTACACCGGAGGATCTTGTTACGGTTGTTTATCTTTCTGCAAATAGAATTGCTCCCGCGCACGAAGGGTTAGAATTGGGAATTGGCGATGCTTCGATTATTAAGGCGCTCGCTGAGGCGTGTGGAAGGACTGAGCAGCAAATTAGGATCCAGTATAAGGAAAAGGGTGACTTAGGTTTAGTTGCGAAAGCTAGCCGTTCTTCACAGTCTATGATGCGGAAGCCTGAACCTTTGACCATTAGGAAGGTTTTCAAGACATTTCATCTTATTGCAAAGGAATCTGGAAAAGACAGTCAAGAAAAGAAAAAGAATCACATAAAGTCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATATAATCCGTTTGCTACAGACAAAATTGCGAATTGGATATGCTGAACAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTGTACACTGAAGAACATTCTAAACCACCTCCCGAAATTAAGTCTCCATTTGAAGAGGCTGCACAGATTGTTAAAAAAGTCTATTCTGTTCTTCCTGATTATGACAAAATTGTGGCTGCACTCCTTAAGGATGGTGTATGGGAACTTCCAAACAAGTGTGATTTTACTCCTGGTGTTCCGGTTGGGCCAATGCTGTCAAAAGCAACCAAGGGTGTATCTGAAATTCTAAATAAGTTTCAGGATGTAGAATTTACGTGTGAGTACAAATACGATGGAGAGCGTGCTCAGATTCATTACTTGGAGAATGGCTCAGTGGAGATTTACAGTAGAAATGCTGAAAGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAAACAACAGTGTCATCTTTTATCCTTGATTGTGAACTCGTTGCATATGATCGTGCAAAACAGAGAATCCTTCCATTCCAGGTGCTTAGTACTCGAGCCCGCAAAAATGTAGCAATAAGTGACATAAAGGTTGATGTTTGCGTATTTGCTTTTGACTTGTTGTACCTTAATGGCGAAGCACTTCTACAGAAAAACCTTAAAATCCGTAGAGAGCATCTCTACGCCTCTTTTGAGGAAGAGTCTGGATTCTTTCAGTTTGCAACATCAACTACATCAAATGATGTTGAGGAGATACAAAAATTTCTTGACCAAGCTATTGATGCAAGTTGTGAGGGATTGATTATTAAAACATTACATGAAGACGCCACATATGAACCCTCCAAGCGTTCACTCAACTGGCTGAAACTGAAGAAAGATTATATGGAAAATATAGGGGACTCCCTAGATTTGGTACCTATTGGTGCTTTTCATGGACGCGGTAAACGTACAGGAGTGTATGGTGCTTTTCTCCTTGCTTGCTATGACAATGATAACGAAGAGTTTCAAAGTATTGCCAAGATAGGAACTGGATTCAAAGAGGATGTGCTTGAAGAACGTTCTACTAGCCTTCGGTCTAAAGTAATTCCCCAACCAAAGTCATATTATCAATATGGGGAATCAACCAATCCTGATGTATGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAAGCTGCAGATCTGACCATTAGCCCTGTTTACCGAGCTGCAGTGGGCAAAGTAGATTCCAATAAGGGCATATCTCTTCGATTTCCGCGTCTAGTTCGAGTTCGGCCTGACAAAGCTCCTGAAGAGGCCTCTTCGTCTGAGCAGGTTGCGGAAATGTATACTGCTCAAAAACACAATCACAACGACAAACAGGATGAAGATGAAGATGATTAA 2202 0.4296 MSKPPPSAFDFLMSGARAAAAAKKKPPPSSSSSPKKRKSPPPSPSPSPLPPPALNPNNNLKTLETVETVEPPNKIRNTSSSSSKGIITELKELIPQLKKKPPSFDPSTVVCWEKNKPVPFLFLCLAFDMINEESGRIVKTDIVCNLLRTVIYTTPEDLVTVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTEQQIRIQYKEKGDLGLVAKASRSSQSMMRKPEPLTIRKVFKTFHLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIKSPFEEAAQIVKKVYSVLPDYDKIVAALLKDGVWELPNKCDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKTTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVAISDIKVDVCVFAFDLLYLNGEALLQKNLKIRREHLYASFEEESGFFQFATSTTSNDVEEIQKFLDQAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMENIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDNDNEEFQSIAKIGTGFKEDVLEERSTSLRSKVIPQPKSYYQYGESTNPDVWFEASEVWEVKAADLTISPVYRAAVGKVDSNKGISLRFPRLVRVRPDKAPEEASSSEQVAEMYTAQKHNHNDKQDEDEDD 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01540 733 Gene3D - 570 733 IPR012340 -
Trre7g01540 733 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 24 732 - -
Trre7g01540 733 SUPERFAMILY Nucleic acid-binding proteins 573 719 IPR012340 -
Trre7g01540 733 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 102 351 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre7g01540 733 Gene3D - 96 363 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre7g01540 733 Gene3D - 371 569 - -
Trre7g01540 733 MobiDBLite consensus disorder prediction 1 59 - -
Trre7g01540 733 Pfam DNA ligase N terminus 119 294 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre7g01540 733 CDD OBF_DNA_ligase_I 573 716 - -
Trre7g01540 733 FunFam DNA ligase 361 567 - -
Trre7g01540 733 CDD Adenylation_DNA_ligase_I_Euk 350 568 - -
Trre7g01540 733 ProSiteProfiles ATP-dependent DNA ligase family profile. 467 603 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre7g01540 733 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 385 393 IPR016059 GO:0003909
Trre7g01540 733 MobiDBLite consensus disorder prediction 699 733 - -
Trre7g01540 733 Pfam ATP dependent DNA ligase domain 361 565 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre7g01540 733 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 353 571 - -
Trre7g01540 733 ProSitePatterns ATP-dependent DNA ligase signature 2. 539 565 IPR016059 GO:0003909
Trre7g01540 733 Gene3D DNA ligase/mRNA capping enzyme 390 515 - -
Trre7g01540 733 NCBIfam ATP-dependent DNA ligase 177 716 IPR000977 GO:0003910|GO:0005524|GO:0071897
Trre7g01540 733 FunFam DNA ligase 570 729 - -
Trre7g01540 733 Pfam ATP dependent DNA ligase C terminal region 590 701 IPR012309 GO:0003910|GO:0006281|GO:0006310
Trre7g01540 733 MobiDBLite consensus disorder prediction 33 55 - -
Trre7g01540 733 FunFam DNA ligase 96 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01540 Trre-Chr7 11570599 11577064 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01540 1 733 Core DNA Replication Machinery Family AT1G08130 67.202 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01540 K10747 - gmx:100783155 1117.45