Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01539 ATGTTGGCATTACATTTCAAACCGTATTTTTCTCTTCCGTTATTATTCCGCATTTCCGTTAATTCTTCTTCTTCCAGTTTAACATTCCCTCTCTCACTAACCCCTCGCCGCAAAATGTCAAAGCCACCACCCTCCGCCTTCGACTTCCTCATGTCCGGCGCACGCGCCGCCGCCGCCGCCAAGAAGAAACCTCCTCCTTCTTCTTCCTCATCTCCCAAGAAACGAAAATCCCCTCCCCCTTCTCCTTCTCCATCTCCACTCCCCCCTCCCGCTCTAAACCCTAACAACAATCTCAAAACCCTAGAAACCGTTGAAACTGTTGAACCACCGAACAAGATCCGCAACACTTCATCTTCTTCTTCCAAGGGGATAATTACCGAATTGAAGGAGCTAATTCCACAGCTGAAGAAGAAACCACCGAGTTTCGATCCAAGTACTGTTGTTTGCTGGGAGAAAAACAAACCTGTGCCATTTTTGTTCCTTTGTTTAGCCTTCGATATGATTAACGAAGAGAGTGGGAGGATTGTGAAAACTGACATTGTGTGCAATCTGTTGAGGACGGTCATATACACTACACCGGAGGATCTTGTTACGGTTGTTTATCTTTCTGCAAATAGAATTGCTCCCGCGCACGAAGGGTTAGAATTGGGAATTGGCGATGCTTCGATTATTAAGGCGCTCGCTGAGGCGTGTGGAAGGACTGAGCAGCAAATTAGGATCCAGTATAAGGAAAAGGGTGACTTAGGTTTAGTTGCGAAAGCTAGCCGTTCTTCACAGTCTATGATGCGGAAGCCTGAACCTTTGACCATTAGGAAGGTTTTCAAGACATTTCATCTTATTGCAAAGGAATCTGGAAAAGACAGTCAAGAAAAGAAAAAGAATCACATAAAGTCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATATAATCCGTTTGCTACAGACAAAATTGCGAATTGGATATGCTGAACAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTGTACACTGAAGAACATTCTAAACCACCTCCCGAAATTAAGTCTCCATTTGAAGAGGCTGCACAGATTGTTAAAAAAGTCTATTCTGTTCTTCCTGATTATGACAAAATTGTGGCTGCACTCCTTAAGGATGGTGTATGGGAACTTCCAAACAAGTGTGATTTTACTCCTGGTGTTCCGGTTGGGCCAATGCTGTCAAAAGCAACCAAGGGTGTATCTGAAATTCTAAATAAGTTTCAGGATGTAGAATTTACGTGTGAGTACAAATACGATGGAGAGCGTGCTCAGATTCATTACTTGGAGAATGGCTCAGTGGAGATTTACAGTAGAAATGCTGAAAGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAAACAACAGTGTCATCTTTTATCCTTGATTGTGAACTCGTTGCATATGATCGTGCAAAACAGAGAATCCTTCCATTCCAGGTGCTTAGTACTCGAGCCCGCAAAAATGTAGCAATAAGTGACATAAAGGTTGATGTTTGCGTATTTGCTTTTGACTTGTTGTACCTTAATGGCGAAGCACTTCTACAGAAAAACCTTAAAATCCGTAGAGAGCATCTCTACGCCTCTTTTGAGGAAGAGTCTGGATTCTTTCAGTTTGCAACATCAACTACATCAAATGATGTTGAGGAGATACAAAAATTTCTTGACCAAGCTATTGATGCAAGTTGTGAGGGATTGATTATTAAAACATTACATGAAGACGCCACATATGAACCCTCCAAGCGTTCACTCAACTGGCTGAAACTGAAGAAAGATTATATGGAAAATATAGGGGACTCCCTAGATTTGGTACCTATTGGTGCTTTTCATGGACGCGGTAAACGTACAGGAGTGTATGGTGCTTTTCTCCTTGCTTGCTATGACAATGATAACGAAGAGTTTCAAAGTATTGCCAAGATAGGAACTGGATTCAAAGAGGATGTGCTTGAAGAACGTTCTACTAGCCTTCGGTCTAAAGTAATTCCCCAACCAAAGTCATATTATCAATATGGGGAATCAACCAATCCTGATGTATGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAAGCTGCAGATCTGACCATTAGCCCTGTTTACCGAGCTGCAGTGGGCAAAGTAGATTCCAATAAGGGCATATCTCTTCGATTTCCGCGTCTAGTTCGAGTTCGGCCTGACAAAGCTCCTGAAGAGGCCTCTTCGTCTGAGCAGGTTGCGGAAATGTATACTGCTCAAAAACACAATCACAACGACAAACAGGATGAAGATGAAGATGATTAA 2316 0.4279 MLALHFKPYFSLPLLFRISVNSSSSSLTFPLSLTPRRKMSKPPPSAFDFLMSGARAAAAAKKKPPPSSSSSPKKRKSPPPSPSPSPLPPPALNPNNNLKTLETVETVEPPNKIRNTSSSSSKGIITELKELIPQLKKKPPSFDPSTVVCWEKNKPVPFLFLCLAFDMINEESGRIVKTDIVCNLLRTVIYTTPEDLVTVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTEQQIRIQYKEKGDLGLVAKASRSSQSMMRKPEPLTIRKVFKTFHLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIKSPFEEAAQIVKKVYSVLPDYDKIVAALLKDGVWELPNKCDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKTTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVAISDIKVDVCVFAFDLLYLNGEALLQKNLKIRREHLYASFEEESGFFQFATSTTSNDVEEIQKFLDQAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMENIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDNDNEEFQSIAKIGTGFKEDVLEERSTSLRSKVIPQPKSYYQYGESTNPDVWFEASEVWEVKAADLTISPVYRAAVGKVDSNKGISLRFPRLVRVRPDKAPEEASSSEQVAEMYTAQKHNHNDKQDEDEDD 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01539 771 Pfam DNA ligase N terminus 157 332 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre7g01539 771 ProSitePatterns ATP-dependent DNA ligase signature 2. 577 603 IPR016059 GO:0003909
Trre7g01539 771 Gene3D - 608 771 IPR012340 -
Trre7g01539 771 Pfam ATP dependent DNA ligase domain 399 603 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre7g01539 771 Pfam ATP dependent DNA ligase C terminal region 628 739 IPR012309 GO:0003910|GO:0006281|GO:0006310
Trre7g01539 771 FunFam DNA ligase 134 401 - -
Trre7g01539 771 FunFam DNA ligase 608 767 - -
Trre7g01539 771 ProSiteProfiles ATP-dependent DNA ligase family profile. 505 641 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre7g01539 771 MobiDBLite consensus disorder prediction 25 97 - -
Trre7g01539 771 FunFam DNA ligase 399 605 - -
Trre7g01539 771 Gene3D DNA ligase/mRNA capping enzyme 428 553 - -
Trre7g01539 771 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 60 770 - -
Trre7g01539 771 MobiDBLite consensus disorder prediction 71 93 - -
Trre7g01539 771 SUPERFAMILY Nucleic acid-binding proteins 611 757 IPR012340 -
Trre7g01539 771 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 423 431 IPR016059 GO:0003909
Trre7g01539 771 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 391 609 - -
Trre7g01539 771 NCBIfam ATP-dependent DNA ligase 215 754 IPR000977 GO:0003910|GO:0005524|GO:0071897
Trre7g01539 771 CDD OBF_DNA_ligase_I 611 754 - -
Trre7g01539 771 CDD Adenylation_DNA_ligase_I_Euk 388 606 - -
Trre7g01539 771 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 140 389 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre7g01539 771 Gene3D - 134 401 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre7g01539 771 Gene3D - 409 607 - -
Trre7g01539 771 MobiDBLite consensus disorder prediction 737 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01539 Trre-Chr7 11570485 11577064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01539 36 771 Core DNA Replication Machinery Family AT1G08130 67.067 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01539 K10747 - gmx:100783155 1142.1