Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01538 ATGTCAAAGCCACCACCCTCCGCCTTCGACTTTCTCATGTCCGGCGCACGCGCCGCCGCCTCCAAGAAGAAACCTCCTCCTTCTTCTTCCTCATCTCCCAAGAAACGAAAATCCCCTCCCCCTTCTCCATCTCCACTCCCCCCTCCCGCTCAAAACCCTAACAACAATCTCAAAACCCTAGAAACCGTTGAACCACCGAACAAGATCCGCAACACTTCATCTTATTCTTCCAAGGGGATAATTAACGAATTGAAGGAGCTAATTCCACAGCTGAAGAAGAAACCACCGAGTTTCGATCCAAGTACTGTTGTTTGCTGGGAGAAAAACAAACCTGTGCCATTTTTGTTCCTTTGTTTAGCATTCGACATGATTAACGAAGAGAGTGGGAGGATTGTGAAAACTGACATTGTGTGCAATCTGTTGAGGACTGTGATATACACTACACCGGAGGATCTTGTTCCGGTTGTTTATCTCTCTGCAAATAGAATTGCTCCGGCGCACCAAGGGTTAGAATTGGGAATTGGCGATGCTTCTATTATCAAGGCGCTCGCTGAGGCGTGTGGAAGGACTGAGCAACAAATTAGGACTCAGTATAAGGAAAAAGGTGATTTAGGTTTAGTTGCGAAAGCTAGCCGTTCTTCACAGTCTATGATGCGGAAGCCTGAACCTTTGACTATTAAGAAGGTTTTCGATACTTTTCATCTTATTGCAAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCGCATAAAGTCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATATAATCCGTTTGCTACAGACAAAATTGCGAATCGGATATGCCGAACAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTGTACACTGAAGAACATTCTAAACCGCCTACCAAAATTAAGTCTCCATTTGAAGAGGCTGCACAGATTGTTAAAAAAGTCTATTCTGTTCTTCCTGATTATGACAAAATTGTGGCTGCACTCCTTAAGGATGGTGTATGGGAACTTCCAAAGAAGTGTGATTTTACTCCTGGTGTTCCGGTTGGGCCAATGCTGTCAAAAGCAACCAAGGGTGTATCTGAAATTCTAAATAAGTTTCAGGATGTAGAATTTACGTGTGAGTACAAATACGATGGAGAGCGTGCTCAGATACATTACTTGGAGAATGGCTCAGTGGAGATTTACAGTAGAAATGCTGAAAGGAACACGGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAAACAACAGTATCATCTTTTATCCTTGATTGTGAACTTGTTGCATATGATCGTGCAAAACAAAGAATCCTTCCATTCCAGGTGCTTAGTACTCGAGCCCGCAAGAATGTAGCAATAAGTGACATAAAGGTTGATGTTTGCGTATTTGCTTTTGACTTGTTGTACCTTAATGGCCAAGCACTTCTTCAGGAAAACCTTAAAATCCGTAGAGAGCATCTCTACGCCTCATTTGAGGAAGAGTCTGGATTCTTTCAGTTTGCGACATCAACTACATCAAATGATGTTGAGGAGATACAAAAATTTCTTGACCAAGCTATTGATGCAAGTTGTGAGGGATTAATCATTAAAACATTACATGAAGACGCGACATATGAACCCTCAAAGCGGTCGCTCAACTGGCTGAAACTGAAGAAAGATTATATGGAAAATATAGGGGACTCTGTAGATTTGGTACCTATTGGTGCTTTCCACGGTCGTGGTAAACGTACAGGAGTGTACGGTACTTATCTCGTTGCGTGCTATGACAAAGAGAACGAAGAATTTCAAAGTCTTGCCAAGTTAGCAACTGGATTCACAGAAGAGGAGCTTGAAGAACGTTCTGCTATCCTTCGCTCTAAAATTATTCCCAAACCAAAGACATATTATAAATGTGGAGAATCAATCAACCCTGATGTCTGGTTTGAAGATAGTGAGGTGTGGGAGGTGAAAGCTGCAGATCTGACTATTAGCCCTGTTTACCGAGCTGCAGTGGGCATAGTAGATTCCAATAAGGGCATATCTCTTCGGTTTCCACGTTTTGTTCGAGTTCGGCCTGACAAAGCTCCTGACCAGGCCACTTCGTCTGAGCAGATTGCTGAAATGTATAATAAGCAAAAACACAATCACACCAACAACCAGGATGATGATGAAGACGACGATTAA 2187 0.4266 MSKPPPSAFDFLMSGARAAASKKKPPPSSSSSPKKRKSPPPSPSPLPPPAQNPNNNLKTLETVEPPNKIRNTSSYSSKGIINELKELIPQLKKKPPSFDPSTVVCWEKNKPVPFLFLCLAFDMINEESGRIVKTDIVCNLLRTVIYTTPEDLVPVVYLSANRIAPAHQGLELGIGDASIIKALAEACGRTEQQIRTQYKEKGDLGLVAKASRSSQSMMRKPEPLTIKKVFDTFHLIAKESGKDSQEKKKNRIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPTKIKSPFEEAAQIVKKVYSVLPDYDKIVAALLKDGVWELPKKCDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKTTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVAISDIKVDVCVFAFDLLYLNGQALLQENLKIRREHLYASFEEESGFFQFATSTTSNDVEEIQKFLDQAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMENIGDSVDLVPIGAFHGRGKRTGVYGTYLVACYDKENEEFQSLAKLATGFTEEELEERSAILRSKIIPKPKTYYKCGESINPDVWFEDSEVWEVKAADLTISPVYRAAVGIVDSNKGISLRFPRFVRVRPDKAPDQATSSEQIAEMYNKQKHNHTNNQDDDEDDD 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01538 728 CDD OBF_DNA_ligase_I 567 712 - -
Trre7g01538 728 MobiDBLite consensus disorder prediction 1 74 - -
Trre7g01538 728 Pfam ATP dependent DNA ligase C terminal region 584 695 IPR012309 GO:0003910|GO:0006281|GO:0006310
Trre7g01538 728 ProSitePatterns ATP-dependent DNA ligase signature 2. 533 559 IPR016059 GO:0003909
Trre7g01538 728 MobiDBLite consensus disorder prediction 53 74 - -
Trre7g01538 728 Gene3D - 564 727 IPR012340 -
Trre7g01538 728 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 22 727 - -
Trre7g01538 728 NCBIfam ATP-dependent DNA ligase 171 710 IPR000977 GO:0003910|GO:0005524|GO:0071897
Trre7g01538 728 MobiDBLite consensus disorder prediction 32 52 - -
Trre7g01538 728 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 96 345 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre7g01538 728 FunFam DNA ligase 564 723 - -
Trre7g01538 728 MobiDBLite consensus disorder prediction 694 728 - -
Trre7g01538 728 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 347 565 - -
Trre7g01538 728 Pfam DNA ligase N terminus 113 288 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre7g01538 728 Pfam ATP dependent DNA ligase domain 355 559 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre7g01538 728 MobiDBLite consensus disorder prediction 698 714 - -
Trre7g01538 728 Gene3D DNA ligase/mRNA capping enzyme 384 509 - -
Trre7g01538 728 FunFam DNA ligase 355 561 - -
Trre7g01538 728 ProSiteProfiles ATP-dependent DNA ligase family profile. 461 597 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre7g01538 728 Gene3D - 90 357 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre7g01538 728 FunFam DNA ligase 90 357 - -
Trre7g01538 728 Gene3D - 365 563 - -
Trre7g01538 728 CDD Adenylation_DNA_ligase_I_Euk 344 562 - -
Trre7g01538 728 SUPERFAMILY Nucleic acid-binding proteins 567 713 IPR012340 -
Trre7g01538 728 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 379 387 IPR016059 GO:0003909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01538 Trre-Chr7 11561480 11567272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01538 1 727 Core DNA Replication Machinery Family AT1G08130 66.622 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01538 K10747 - gmx:100783155 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01538 7 11561480 11567272 Trre7g01538 7 11561480 11567272 ECH