Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01537 ATGTTCGCATTACATTTCAAACCGTATTTTTCTCTTCCGTTATTATTCCGCATTTCCGTTAATAATTCTACTTCTTCCAGTTTAACATTCCCTCACTCACTAACCCCTCGCCGCAAAATGTCAAAGCCACCACCCTCCGCCTTCGACTTTCTCATGTCCGGCGCACGCGCCGCCGCCTCCAAGAAGAAACCTCCTCCTTCTTCTTCCTCATCTCCCAAGAAACGAAAATCCCCTCCCCCTTCTCCATCTCCACTCCCCCCTCCCGCTCAAAACCCTAACAACAATCTCAAAACCCTAGAAACCGTTGAACCACCGAACAAGATCCGCAACACTTCATCTTATTCTTCCAAGGGGATAATTAACGAATTGAAGGAGCTAATTCCACAGCTGAAGAAGAAACCACCGAGTTTCGATCCAAGTACTGTTGTTTGCTGGGAGAAAAACAAACCTGTGCCATTTTTGTTCCTTTGTTTAGCATTCGACATGATTAACGAAGAGAGTGGGAGGATTGTGAAAACTGACATTGTGTGCAATCTGTTGAGGACTGTGATATACACTACACCGGAGGATCTTGTTCCGGTTGTTTATCTCTCTGCAAATAGAATTGCTCCGGCGCACCAAGGGTTAGAATTGGGAATTGGCGATGCTTCTATTATCAAGGCGCTCGCTGAGGCGTGTGGAAGGACTGAGCAACAAATTAGGACTCAGTATAAGGAAAAAGGTGATTTAGGTTTAGTTGCGAAAGCTAGCCGTTCTTCACAGTCTATGATGCGGAAGCCTGAACCTTTGACTATTAAGAAGGTTTTCGATACTTTTCATCTTATTGCAAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCGCATAAAGTCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATATAATCCGTTTGCTACAGACAAAATTGCGAATCGGATATGCCGAACAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTGTACACTGAAGAACATTCTAAACCGCCTACCAAAATTAAGTCTCCATTTGAAGAGGCTGCACAGATTGTTAAAAAAGTCTATTCTGTTCTTCCTGATTATGACAAAATTGTGGCTGCACTCCTTAAGGATGGTGTATGGGAACTTCCAAAGAAGTGTGATTTTACTCCTGGTGTTCCGGTTGGGCCAATGCTGTCAAAAGCAACCAAGGGTGTATCTGAAATTCTAAATAAGTTTCAGGATGTAGAATTTACGTGTGAGTACAAATACGATGGAGAGCGTGCTCAGATACATTACTTGGAGAATGGCTCAGTGGAGATTTACAGTAGAAATGCTGAAAGGAACACGGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAAACAACAGTATCATCTTTTATCCTTGATTGTGAACTTGTTGCATATGATCGTGCAAAACAAAGAATCCTTCCATTCCAGGTGCTTAGTACTCGAGCCCGCAAGAATGTAGCAATAAGTGACATAAAGGTTGATGTTTGCGTATTTGCTTTTGACTTGTTGTACCTTAATGGCCAAGCACTTCTTCAGGAAAACCTTAAAATCCGTAGAGAGCATCTCTACGCCTCATTTGAGGAAGAGTCTGGATTCTTTCAGTTTGCGACATCAACTACATCAAATGATGTTGAGGAGATACAAAAATTTCTTGACCAAGCTATTGATGCAAGTTGTGAGGGATTAATCATTAAAACATTACATGAAGACGCGACATATGAACCCTCAAAGCGGTCGCTCAACTGGCTGAAACTGAAGAAAGATTATATGGAAAATATAGGGGACTCTGTAGATTTGGTACCTATTGGTGCTTTCCACGGTCGTGGTAAACGTACAGGAGTGTACGGTACTTATCTCGTTGCGTGCTATGACAAAGAGAACGAAGAATTTCAAAGTCTTGCCAAGTTAGCAACTGGATTCACAGAAGAGGAGCTTGAAGAACGTTCTGCTATCCTTCGCTCTAAAATTATTCCCAAACCAAAGACATATTATAAATGTGGAGAATCAATCAACCCTGATGTCTGGTTTGAAGATAGTGAGGTGTGGGAGGTGAAAGCTGCAGATCTGACTATTAGCCCTGTTTACCGAGCTGCAGTGGGCATAGTAGATTCCAATAAGGGCATATCTCTTCGGTTTCCACGTTTTGTTCGAGTTCGGCCTGACAAAGCTCCTGACCAGGCCACTTCGTCTGAGCAGATTGCTGAAATGTATAATAAGCAAAAACACAATCACACCAACAACCAGGATGATGATGAAGACGACGATTAA 2304 0.4245 MFALHFKPYFSLPLLFRISVNNSTSSSLTFPHSLTPRRKMSKPPPSAFDFLMSGARAAASKKKPPPSSSSSPKKRKSPPPSPSPLPPPAQNPNNNLKTLETVEPPNKIRNTSSYSSKGIINELKELIPQLKKKPPSFDPSTVVCWEKNKPVPFLFLCLAFDMINEESGRIVKTDIVCNLLRTVIYTTPEDLVPVVYLSANRIAPAHQGLELGIGDASIIKALAEACGRTEQQIRTQYKEKGDLGLVAKASRSSQSMMRKPEPLTIKKVFDTFHLIAKESGKDSQEKKKNRIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPTKIKSPFEEAAQIVKKVYSVLPDYDKIVAALLKDGVWELPKKCDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKTTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVAISDIKVDVCVFAFDLLYLNGQALLQENLKIRREHLYASFEEESGFFQFATSTTSNDVEEIQKFLDQAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMENIGDSVDLVPIGAFHGRGKRTGVYGTYLVACYDKENEEFQSLAKLATGFTEEELEERSAILRSKIIPKPKTYYKCGESINPDVWFEDSEVWEVKAADLTISPVYRAAVGIVDSNKGISLRFPRFVRVRPDKAPDQATSSEQIAEMYNKQKHNHTNNQDDDEDDD 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01537 767 MobiDBLite consensus disorder prediction 737 753 - -
Trre7g01537 767 Pfam ATP dependent DNA ligase C terminal region 623 734 IPR012309 GO:0003910|GO:0006281|GO:0006310
Trre7g01537 767 ProSiteProfiles ATP-dependent DNA ligase family profile. 500 636 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre7g01537 767 Gene3D - 129 396 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre7g01537 767 NCBIfam ATP-dependent DNA ligase 210 749 IPR000977 GO:0003910|GO:0005524|GO:0071897
Trre7g01537 767 FunFam DNA ligase 129 396 - -
Trre7g01537 767 SUPERFAMILY Nucleic acid-binding proteins 606 752 IPR012340 -
Trre7g01537 767 CDD Adenylation_DNA_ligase_I_Euk 383 601 - -
Trre7g01537 767 FunFam DNA ligase 394 600 - -
Trre7g01537 767 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 59 766 - -
Trre7g01537 767 MobiDBLite consensus disorder prediction 92 113 - -
Trre7g01537 767 Pfam ATP dependent DNA ligase domain 394 598 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre7g01537 767 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 386 604 - -
Trre7g01537 767 CDD OBF_DNA_ligase_I 606 751 - -
Trre7g01537 767 ProSitePatterns ATP-dependent DNA ligase signature 2. 572 598 IPR016059 GO:0003909
Trre7g01537 767 Pfam DNA ligase N terminus 152 327 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre7g01537 767 Gene3D DNA ligase/mRNA capping enzyme 423 548 - -
Trre7g01537 767 MobiDBLite consensus disorder prediction 71 91 - -
Trre7g01537 767 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 418 426 IPR016059 GO:0003909
Trre7g01537 767 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 135 384 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre7g01537 767 MobiDBLite consensus disorder prediction 26 113 - -
Trre7g01537 767 Gene3D - 603 766 IPR012340 -
Trre7g01537 767 FunFam DNA ligase 603 762 - -
Trre7g01537 767 Gene3D - 404 602 - -
Trre7g01537 767 MobiDBLite consensus disorder prediction 733 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01537 Trre-Chr7 11561363 11567272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01537 38 766 Core DNA Replication Machinery Family AT1G08130 66.577 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01537 K10747 - gmx:100783155 1118.61