Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01535 ATGGAAGTACAAGAAATTGAAAATTTTGGCTGCACACATTATAGAAGGAGATGCAAGATCATAACACCATGTTGTAATGAAGTTTTTGGCTGTAGGCACTGCCACAATGAAGCCAAGAACTCGGATGAGATTGACCCCATTGATCGTCATAATATACCGCGACATGAAGTTAAAAAGGTTATATGCTCCTTATGTGATACAGAGCAAGATGTTCAGCAATACTGCATAAATTGTGGAGTTTGTATGGGAGAGTACTTTTGTGGTACATGCAAATTCTTTGATGATGATATTTCTAAGCAACAATATCACTGTGATGAATATGGAATCTGCAGGACTGGTGGCAAGGATAACTTTTTCCATTGCAAAAGATGTGGATGTTGCTATTCCAAGGAACTCAAAGAGAGACATCATTGTATAGAAAGAGCAATGCATCATAATTGTCCTATTTGCTTTGAGTATTTATTTGACACATTAAGAGACTCTAGTGTCCTACCTTGTGGCCATACTATGCATTTTGAGTGTGTAAAAGAGATGGAAAATCATCGTAGGTACAAATGTCCTGTTTGCTCAAAATCCATTTGTGATATGTCAAGTGTGTGGAAGAAACTTGATCAAGCGGTGTCCTCAACACCAATGCCTGAATCATACCGAAATAAGAAGGTATGGATACTTTGCAATGATTGTGGTGTAAACTCTCATGTGCAATTCCACATTGTGGGACATAAGTGTTTAAGTTGCAATTCATACAACACAAGGCAAATACAAGGAATACCTTCTAGCAGCTCAATGTCTTCTAGGGTGGCAGAGATGGTTAATTAG 819 0.3797 MEVQEIENFGCTHYRRRCKIITPCCNEVFGCRHCHNEAKNSDEIDPIDRHNIPRHEVKKVICSLCDTEQDVQQYCINCGVCMGEYFCGTCKFFDDDISKQQYHCDEYGICRTGGKDNFFHCKRCGCCYSKELKERHHCIERAMHHNCPICFEYLFDTLRDSSVLPCGHTMHFECVKEMENHRRYKCPVCSKSICDMSSVWKKLDQAVSSTPMPESYRNKKVWILCNDCGVNSHVQFHIVGHKCLSCNSYNTRQIQGIPSSSSMSSRVAEMVN 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01535 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 202 IPR013083 -
Trre7g01535 272 Pfam CHY zinc finger 11 92 IPR008913 GO:0008270
Trre7g01535 272 ProSiteProfiles Zinc finger CTCHY-type profile. 82 146 IPR017921 -
Trre7g01535 272 SUPERFAMILY RING/U-box 145 195 - -
Trre7g01535 272 ProSiteProfiles Zinc finger CHY-type profile. 4 80 IPR008913 GO:0008270
Trre7g01535 272 FunFam RING finger and CHY zinc finger domain-containing protein 1 218 262 - -
Trre7g01535 272 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 7 255 - -
Trre7g01535 272 SUPERFAMILY CHY zinc finger-like 8 82 IPR037274 GO:0008270
Trre7g01535 272 ProSiteProfiles Zinc finger RING-type profile. 147 190 IPR001841 -
Trre7g01535 272 Pfam Zinc-ribbon 194 252 IPR039512 -
Trre7g01535 272 SMART ring_2 147 189 IPR001841 -
Trre7g01535 272 Pfam Ring finger domain 146 189 IPR001841 -
Trre7g01535 272 SUPERFAMILY Zinc hairpin stack 83 140 IPR037275 -
Trre7g01535 272 Gene3D - 218 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01535 Trre-Chr7 11550044 11552551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01535 5 265 C2H2 Transcription Factor Family AT3G18290 39.259 5.71e-51 177
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01535 7 11550044 11552551 Trre7g01535 7 11550044 11552551 ECH