Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01534 ATGGATTTTTATCAAGAGAATCTTGCTCCTATTAACAATGACTTTGAGCTACATGATTTCATTGATGATCCAAACTTTGATCAATTCATCAATTTGATTCGTGGTGAGGAGAATGAAGATACTACTATTTGTAACTTCAATTCTGACCTCATAAATCCAACTTTTGTTGATAACTCATTCCTTTCATTTCCTTCAAACCCATTTGATCAAAACACAAATAACTCTATTACCCCTTTTGATCCAACTTCTTCACTTAACTCTTTCTCTTGTTTTGATGGAGAAACTAAGGGAGAAAGAGGAGAAGAAAATGATGGAGATCATTACTCATCTCCAACAACAACTAACACCACAACAACTACAAGTGTTGATACTAAGCCAAGGGGGAAAACTGATAGATCCAAGACATTGGTTTCTGAGCGGAGGAGGCGAGGCCGAATGAAGGATAAGCTTTACGCATTGCGTTCTTTAGTTCCCAACATAACTAAGATGGATAAGGCTTCTATAATTGGAGATGCTGTTTCATATATGTGTGAACTCCAATCACAAGCAAAGAAGCTCAAAGCAGAGGTTGCAGGACTTGAAACATCATTAGCAATGTCCAAAACTTATCAAGGATCAATTGAAAACCACAAAAAGATTCAATTCAATGGTAACAATGGTTCAATATGCAAGAAGATTATTCAGATGGATATGATTCAAGTGGATGAAAGAGGGTTTTATGTTAAAATTGTTTGCAATAAAGGAGAAAGAGTGGCTTCTTCATTATACAAGTCTCTTGAATCTTTGAGAGATTTCAATGTTCAAAATTCAAATTTGGCCACTATTTCTGATGGTTTTCTACTTACATTTTCATTGAATGTGAAAAATTGTGAACAAGAAATCAACCTGCCAAATTTAAAGCTATGGGTGATCAGTGCTTTTCTAAACCAAGGCTTTGAACTGATACCTTCTTTTCGATCATGA 963 0.351 MDFYQENLAPINNDFELHDFIDDPNFDQFINLIRGEENEDTTICNFNSDLINPTFVDNSFLSFPSNPFDQNTNNSITPFDPTSSLNSFSCFDGETKGERGEENDGDHYSSPTTTNTTTTTSVDTKPRGKTDRSKTLVSERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYMCELQSQAKKLKAEVAGLETSLAMSKTYQGSIENHKKIQFNGNNGSICKKIIQMDMIQVDERGFYVKIVCNKGERVASSLYKSLESLRDFNVQNSNLATISDGFLLTFSLNVKNCEQEINLPNLKLWVISAFLNQGFELIPSFRS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01534 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Trre7g01534 320 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 126 196 - -
Trre7g01534 320 MobiDBLite consensus disorder prediction 125 142 - -
Trre7g01534 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 206 IPR036638 GO:0046983
Trre7g01534 320 Pfam Helix-loop-helix DNA-binding domain 138 180 IPR011598 GO:0046983
Trre7g01534 320 MobiDBLite consensus disorder prediction 90 142 - -
Trre7g01534 320 MobiDBLite consensus disorder prediction 107 124 - -
Trre7g01534 320 Gene3D - 122 196 IPR036638 GO:0046983
Trre7g01534 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 12 309 - -
Trre7g01534 320 SMART finulus 136 185 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01534 Trre-Chr7 11540219 11542062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01534 13 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 54.633 5.04e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre7g01534 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01534 K26214 - gmx:100805451 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03650 11 49789908 49791647 Trre7g01534 7 11540219 11542062 PCT