Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01530 ATGGGAGAGCTAGTTATGGAGGAACAAAAACTGATGAATTTTTCTAAGAAAGATGCAACTCATATTGCCAAAGGAAAACGCACAAAGAGGTTAAGACTTTTATCTCCTTGTGGTGTTGTTTCTACTGGTATCACATCTAGTGAAGAAAATGATTATTTTGATGATGAGATTGAAGATGATGATGATGTTGAAGAAGATATGGCTAATTGTTTGATTCTCCTTGCTCAAGGAGGAAATCACAAGCAATATGGTGATGGTGATGATGATGACAACAAAAGGGAAAAGGGTAGTTATGGAAATAAAAAAATTACTCAGATTGTAACTGCAACTGCTACAACAAAAGCTGGTTTGTATATTTATGAATGCAAAACATGTAACAGAACTTTTCCTTCTTTTCAAGCTTTGGGTGGTCATAGAGCAAGTCATAAAAAGCCCAAAATTATGGTTGAGGAGAAAAAACTACCATCATCGCCACCGTCCTCAATCTCATCACATGATTCGCAGTCAGTTAAACTGGTTGTGAATCGTGATGAATTTGAAGAAGCTGAGAAACCTCGTGGTAGACCCACGATTTCTTTTCAAATGGGGAATCAAGGATTGAAAGGTATTAATGGGAACAAAGCTAAGATTCATGAGTGTTCTATTTGTGGATCAGAATTCACATCTGGACAAGCATTGGGTGGACACATGAGGAGACATAGGACATCCTCCGCAAACACCTCTGTCGCGGAGGAAAGAGGAGTTCGGCCGCAGAATATTTTACAGTTTGATCTTAACCTTCCAGCTCCCGAGGAGGATCTCCGCGAATCAAAGTTTCAGTTTCCGACTTCACAAAAATCTATGGTGATGTCTGCTGCCCCGGCTTTGGTGGGTTGTCATTATTAA 885 0.3955 MGELVMEEQKLMNFSKKDATHIAKGKRTKRLRLLSPCGVVSTGITSSEENDYFDDEIEDDDDVEEDMANCLILLAQGGNHKQYGDGDDDDNKREKGSYGNKKITQIVTATATTKAGLYIYECKTCNRTFPSFQALGGHRASHKKPKIMVEEKKLPSSPPSSISSHDSQSVKLVVNRDEFEEAEKPRGRPTISFQMGNQGLKGINGNKAKIHECSICGSEFTSGQALGGHMRRHRTSSANTSVAEERGVRPQNILQFDLNLPAPEEDLRESKFQFPTSQKSMVMSAAPALVGCHY 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01530 294 ProSitePatterns Zinc finger C2H2 type domain signature. 213 233 IPR013087 -
Trre7g01530 294 Gene3D Classic Zinc Finger 117 233 - -
Trre7g01530 294 SMART c2h2final6 211 233 IPR013087 -
Trre7g01530 294 SMART c2h2final6 120 142 IPR013087 -
Trre7g01530 294 PANTHER ZINC FINGER PROTEIN ZAT5 49 278 - -
Trre7g01530 294 Pfam C2H2-type zinc finger 120 145 - -
Trre7g01530 294 Pfam C2H2-type zinc finger 211 235 - -
Trre7g01530 294 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Trre7g01530 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 211 238 IPR013087 -
Trre7g01530 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Trre7g01530 294 SUPERFAMILY beta-beta-alpha zinc fingers 119 233 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01530 Trre-Chr7 11519543 11520427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01530 18 294 C2H2 Transcription Factor Family AT2G28200 41.083 1.85e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g01530 zf-C2H2_6 4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01530 - - aprc:113858527 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02508 1 20357901 20358860 Trre7g01530 7 11519543 11520427 ECH
Trre11g03653 11 49823564 49824454 Trre7g01530 7 11519543 11520427 ECH
Trre7g01530 7 11519543 11520427 Trre7g01530 7 11519543 11520427 ECH
Trre11g03653 11 49823564 49824454 Trre7g01530 7 11519543 11520427 PCT