LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g01521	ATGGGTCAGATCCAGTACTCTGAGAAGTATTTTGATGATACTTATGAGTATAGGCATGTTGTTCTTCCTCCTGAAGTCGCTAAGTTGCTTCCTAAGAATCGGCTTCTCTCTGAAAATGAGTGGCGTGCCATAGGAGTTCAGCAGAGCCGTGGTTGGGTTCACTATGCCATTCATCGTCCAGAGCCACACATTATGCTTTTCAGGAGGCCTTTGAATTATCAGCAGCAGCAGGACAATCAGGCACAACAAAGCATGCTTGTGAAATGA	267	0.4532	MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQDNQAQQSMLVK	88

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g01521	88	SUPERFAMILY	Cell cycle regulatory proteins	1	82	IPR036858	GO:0016538
	Trre7g01521	88	PRINTS	Cyclin-dependent kinase regulatory subunit signature	40	54	IPR000789	GO:0016538
	Trre7g01521	88	PRINTS	Cyclin-dependent kinase regulatory subunit signature	18	32	IPR000789	GO:0016538
	Trre7g01521	88	PRINTS	Cyclin-dependent kinase regulatory subunit signature	55	69	IPR000789	GO:0016538
	Trre7g01521	88	PRINTS	Cyclin-dependent kinase regulatory subunit signature	3	17	IPR000789	GO:0016538
	Trre7g01521	88	SMART	CKS_2	3	72	IPR000789	GO:0016538
	Trre7g01521	88	FunFam	Cyclin-dependent kinases regulatory subunit	1	84	-	-
	Trre7g01521	88	Gene3D	-	1	84	IPR036858	GO:0016538
	Trre7g01521	88	Pfam	Cyclin-dependent kinase regulatory subunit	4	70	IPR000789	GO:0016538
	Trre7g01521	88	ProSitePatterns	Cyclin-dependent kinases regulatory subunits signature 1.	6	24	IPR000789	GO:0016538
	Trre7g01521	88	PANTHER	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	3	84	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g01521	Trre-Chr7	11435365	11436631	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g01521	1	80	Core Cell Cycle Gene Families	AT2G27970	90.000	2.05e-52	156

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g01521	K02219		-	gmx:100786340	181.03

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre7g01521	7	11435365	11436631	Trre7g01521	7	11435365	11436631	ECH