Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01518 ATGGCTATTGCTGGTCTGCACAGTGTGTCTGTGCTTGACTCGTCTTTTTTGAGGGACTCGCAGTCTCATGCGTCTAGAAGGATGGGAGATGGAAGAAGGGGAAGCACCCGGTCGTCTTCACTTTTGCAAATGTGGCGAGATATTGAGGATGAGCATGCGGTGAGTCAAGTTCAAGGAAGACCTGGTGAAGTACTTCTTGAGCAAAGGAACAATGGGTCGGTTGTGGATCTTTCACTCGAAGATACACCTGATACACCAGAGAGAGTGGAAAGGCATGATTTAGAAGATGCGGTTTTGGGTGAGACTGAATCTGAAACATGGTCACAGTCGCAAAGTCAGACTGAATCCCATGATGGTCATGAGGATTTAAACAATTCTAGCTGCGAAAACTCGTCTGTTTTCGGAGAAGGTGAAAGGGAAAGAGTGAGGCGAATTTTCAGGGAATGGATGAATAACGGATCTAGGGATCGTGGATCAAACATTTCCAGGAGAAGTAACAGTACAAGGGGAGAATGGCTTGGAGAAACTGAACAAGAAAGAGTGAGAGTTATAAGGGAGTGGGTCCAAATGAGCAGTCAGCAGAGAAGTGTTTCTTCAACAGAAAACACGGAACAACCATGTGCTGAAATTGATACACAAATTGAACGTGTGCGTGATGGACTTGTTGTTAACCACAGTGAGGGCCAAAATGAACATATAAGGCGGGGTATGCGTAAATTACGTGGCAAACAGGTTATGCTTGATATGCTTAAGAAAGCTGAGAGGGAAAGGCAGAGAGAAATGCAGGAGTTGCTGGACCATCAGGCTGTATCACGTTTTCCCCATCGCAATCGCATTCAGGCATTGCTTAGAGGCAGATTCTTGAGAAATGATAGATCTGTTGACCATAGCAGGCCCACATCTGTAGCAGAAAGTGAATTAGGCTTACTAAGACAAAGACAAACTGTATCAGGTCTAAGAGAAGGGTTCTTCTCTAGAATGGACAATACCAGTTCCAGTCAAGCAACCAGCAACCTATCTGATACCTCGTCAAACACTGATATTGATTTTAATACAAATGAACAAACTGGAGAAAGCAGTTCATGTATGGTCATTGAACCTAATAACAGAAATGGTAATAGAGTTGGGATATCTGGTGGCCACTGTCTAGAAGGAACAACATGTGAGAGTTTAAATTGTCAAGAATCTATTTCCCATGCAGAAGGAAATCGGTTGCAGTGCTTGCAAATTGAATCAGTAGATAGTCAGTCATCATCCAGTGTTGGGTATGAAAGAAGAGATGACACTGGGAAAAATGTTGATGTGATGGCAATCAGAGATACAGCTAATGAACTTATCCAACACAGCTTACAAATTGGTGATTCAGACCATAGTAATAATCAAGAATCAAGCGAGGTACCTAATGAGCAATCTGAGCTGGGTGATATAAGTAATGGTGAAAACAATTCACCAAATCACAATGATTATGCGGAGAGCAATGTTGTTGATGATGTTAATTATGGACCTGATGCTCTAGAAGAACTGCCGGAAGAAATTGTTGAAAATGAAGGAAGTGGCTGGCATCAGAGTAACACTGAATGGATAAATAGCACTCATGAAAATGGGGATGATAATCAGCTCAGCAATGCAAATGAGTGGCCTGAAAACAGTTGGGCAAATGAGGATGGAGAAAACCCTCGTCTGCAAGAAGCTTCTGAAGTGTGGCAAGAGGATAGTGGCTTCCAAGAGGCCGTGGAAAATTGGTTGGGAGGACCTTCTGACCATGAAACTGCTCCAGGTGGTAGAGTTCGTAGTCTTTATTTTCCTGATGATGACAATGTATACAATGTTGAACTCAGGGAACTTCATAGTAGGAGACGTGTCTCTAATCTTCTCGGCAGTAGTTTCCGTGAAAGTCTTGACCAGTTGATACAATCATATGTCGAAAGACAAGGTCATGCTAACATGGAGTGGGATATGGATGAAGCAACCCCTTTTGCCGCCTCTGTAGAACAGAACCTGGAGCAGCAGAGTAGAGATCATATTGTTGATCAGGAAGGCACTATTAATAGTCGACCTGACTTGCCCTCTTTGCCTAGACCTCCCACTCCACCTCTATGGGATCCGCATCCTCATGGTGATAACTGGCCACAAAATGATGATTTAGAGATTATCAATGACTTGAGACTTGACATGGCTAGATTACAGCAAAGGATGAATACTATGCAGAAGATGCTCGAAGCATGTATGGATATGCAGCTTGAGCTTCAGCGCTCAATAAAACAAGAAGTTTCTGCAGCTCTAAATCGCTCAGCTGGTTCATCAGGAATACATGACTGTGATTCACCAGATGATATTTCTAAATGGGAAAGTGTGAGAAAAGGACTTTGCTGTATTTGCTGCGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTGTGCACATGCTCAAAATGTGCCAATGACTTGCTTCAGAATAGAAGGAATTGCCCAATGTGTCAAGCCCCTGTCGTGGAGGTCATACGTACTTATTCTATACTATAA 2529 0.4294 MAIAGLHSVSVLDSSFLRDSQSHASRRMGDGRRGSTRSSSLLQMWRDIEDEHAVSQVQGRPGEVLLEQRNNGSVVDLSLEDTPDTPERVERHDLEDAVLGETESETWSQSQSQTESHDGHEDLNNSSCENSSVFGEGERERVRRIFREWMNNGSRDRGSNISRRSNSTRGEWLGETEQERVRVIREWVQMSSQQRSVSSTENTEQPCAEIDTQIERVRDGLVVNHSEGQNEHIRRGMRKLRGKQVMLDMLKKAERERQREMQELLDHQAVSRFPHRNRIQALLRGRFLRNDRSVDHSRPTSVAESELGLLRQRQTVSGLREGFFSRMDNTSSSQATSNLSDTSSNTDIDFNTNEQTGESSSCMVIEPNNRNGNRVGISGGHCLEGTTCESLNCQESISHAEGNRLQCLQIESVDSQSSSSVGYERRDDTGKNVDVMAIRDTANELIQHSLQIGDSDHSNNQESSEVPNEQSELGDISNGENNSPNHNDYAESNVVDDVNYGPDALEELPEEIVENEGSGWHQSNTEWINSTHENGDDNQLSNANEWPENSWANEDGENPRLQEASEVWQEDSGFQEAVENWLGGPSDHETAPGGRVRSLYFPDDDNVYNVELRELHSRRRVSNLLGSSFRESLDQLIQSYVERQGHANMEWDMDEATPFAASVEQNLEQQSRDHIVDQEGTINSRPDLPSLPRPPTPPLWDPHPHGDNWPQNDDLEIINDLRLDMARLQQRMNTMQKMLEACMDMQLELQRSIKQEVSAALNRSAGSSGIHDCDSPDDISKWESVRKGLCCICCESNIDSLLYRCGHLCTCSKCANDLLQNRRNCPMCQAPVVEVIRTYSIL 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01518 842 MobiDBLite consensus disorder prediction 19 39 - -
Trre7g01518 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 779 840 IPR013083 -
Trre7g01518 842 MobiDBLite consensus disorder prediction 517 551 - -
Trre7g01518 842 CDD mRING-HC-C3HC5_NEU1 790 839 - -
Trre7g01518 842 MobiDBLite consensus disorder prediction 453 492 - -
Trre7g01518 842 Pfam Zinc finger, C3HC4 type (RING finger) 787 834 - -
Trre7g01518 842 MobiDBLite consensus disorder prediction 81 99 - -
Trre7g01518 842 SUPERFAMILY RING/U-box 789 836 - -
Trre7g01518 842 Coils Coil 718 745 - -
Trre7g01518 842 Coils Coil 243 270 - -
Trre7g01518 842 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 450 842 - -
Trre7g01518 842 MobiDBLite consensus disorder prediction 326 360 - -
Trre7g01518 842 MobiDBLite consensus disorder prediction 515 571 - -
Trre7g01518 842 ProSiteProfiles Zinc finger RING-type profile. 790 829 IPR001841 -
Trre7g01518 842 MobiDBLite consensus disorder prediction 680 699 - -
Trre7g01518 842 MobiDBLite consensus disorder prediction 75 135 - -
Trre7g01518 842 MobiDBLite consensus disorder prediction 453 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01518 Trre-Chr7 11395828 11400199 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01518 - - gmx:100801329 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01518 7 11395828 11400199 Trre7g01518 7 11395828 11400199 ECH
Trre11g03669 11 49948338 49950765 Trre7g01518 7 11395828 11400199 PCT