Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01500 ATGGATAAACCTAGCGGTAGATCGAGAGGTCGTCCTAAAAAACGACGAATGGAAGATGAAAAGGAGGGGAAAACGGTTGCTGATGGTAAAAGACAACTGTTGGAGGCCAAACCGATAGCATTGGTTGGCCGATATGTTCTGAAAGAGTTCCCAGAAAATGGGATTTATCTGGGCAAAGTCATCTATTATGACACTGGCCTATATAGAGTGAATTACGAAGATGGGGATTTCGAAGACCTGGAAAGTGGTGAAATCCGTCCAATACTTATCAGGGACGAGGATTTTGATGCTGGTTTAGCGAAAAGGAGGACTAAGCTGGAGAAAGTAGTGGCCAAGAACAGTACCAAGGCTGCTGTAGCTGACAAGGTTTCAGGGAAATCTGGTGAGGAGGAATCTGCTGCTGGTGTGACTCCTCCAAGCGAATTGAATGGGGAATTATCGATTGAAATCGATAAGGAAGAAGATGATGGAGCAGATGCTGAAATTTCAAGCAAGTCTGTTCCTGACGTGGAGACAGCACCTTTGCCGCCACCATTGCAGTTGCCGTTGTCATCGGGAACTATCGGTGTGCCGGAGCAGAGCGTCTCCCATCTCTTTTCTGTGTATGGATTCTTAAGATCCTTCAGCACACAGCTATTTCTTCATCCGTTTAGTTTGGACGAGTTTGTTGGCTGTTTAAATTGCCAAGTCAACAATACGTTATTTGATGCTATTAACTTTTCATTAATGCGGGTGTTAAGGCGTCATCTTGAAACACTGTCGTCTGAGGGATCTGAGCTTGCATCACAATGCCTTAGGTGCAACGATTGGAGCTTGCTCGATACATTGACTTGGTCTGTTTTTGTGAGTCTGTATTTGGTGGTTAAAGGGTATACCAAAGGACCCGAATGGAAGGGATTTTACGATGAGGTTTTTAGAAGTGAGTATTATTTGTTGCCTGTAAGTAGGAAGTTAATGATACTGCAAATTCTTTGTGACGATGTTTTGGAATCTGAGGAGCTAAAAACTGAAATGAACATGCGAAAGGAATCAGAGGTCGGTATGGATTATGATGCAGAAGATATCCTTCCTGCAGAAATGGGACCCAGAAAAGTCCATCCAAGATATACCAGAACCTCTTTTTGTGAGGATAAAGAAGCTATCAAATTGGTTTCAGCGTCAAATGCTGTGAACCAACCTAGTAACTCTATTTCATATTGCAGAGATACAGAAAGCACCGGAGATGGGGATTTTGATAGAAATGGAGATGAATGTCGCCTCTGTGGTATGGATGGAACCCTTCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTGACGAAAAGTTTTATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATCAATATGACTGGGCCCACAATTGCAAAAGGAACCTCGCTTAGAGGGGCCGAAATATTTGGAAAGGATTTGTATGGGCAGCTCTTCATGGGTACATGCGACCACTTGCTTGTGCTTAATATTGGCAACAATGAAGTTTGTCTTAGATATTATAATCGGAAGGACATCCCTAAAGTTGTCCAACTGCTTTATGAATCCACGCTGCATAGGCCAATGTACTATGGTATTTGCATGGCAGTGCTACAATACTGGAATATTTCAGAAAACTTCTTACCCCTTCCTGCTTCAACTGAAACAAATATGAAGGATGAGACAGAGTTTTCTGCCCCTTTACTTTCTCCTCCAAGTGAAGACAACCATTCTACAACCACTGCAAGTTTGCTTCACAATGATATGGTGCCTTCCCTTGATGGTTTGCAAGTTAGCACTCAAAGTCCTGGTCTTCATAGCAGTGGCATTGTTAGGAGTGAAGAGGGCCTTACTGTGGTTAATAACATTGCTGCGGAAACTAGGACAGAGGCAATAATTTCAGCTGGTCTTGTTAGCCCTCAGTCCGACCCGAACTTGCAGAACTCTGTCAATATGTCAACTACAGTAGATGCTGCTAAGTTCTCTTTGGTAAAAAGTCAATTAAGTAATTGCGGCCATGCAAATGATATGGGGTTGCCTTTGAATTTTTCTTTGCTAAACAAAGAAAACACCCCAGTAGGCTTTGGAAAGTCTGAAAGCAATGCAAATGATGATTTTTGTTACTTCGGTTTCTCCTATAAACCCACATCATACATAAACTGCTATATGCATGGTGACTTTTCTGCATCAGCAGCTGCCAAATTTGCCATGATTTCTTCAGAGGAGTCTAGGTCAGAAGGTCATGCATCAGATAGCCATAAAAAAACCGTATCTGCATATACTTACTTGCAAGCAAAAGCATTCTCACTAGCAGCATCACGTTTCTTTTGGCCAAGTTCTGAAAAGAAGCCCGTGGAGGTTCCAAGAGAGAGGTGTGGTTGGTGCTTTTCCTGTAAAGCCAATGTTGCTAGCAAGAGAGGGTGCATGTTAAATCATGCTCTAATAAGTGCCACAAAAAGTGCCATGAAAATCCTTGCTAAATTTTCTCCTTTGAGGAGTGGAGATGGAAGTTTACCTAGCACCATTGCAACATACATTTTATATATGGAGAAATGTTTACATGGTTTAGTTGTTGGGCCCTTCATAAATGCAAGCTATAGAAACAACTGGCGTAAGCAAGTGGAACAGGCCACAACACTTGGTGCTCTCAAGCCACTTCTACTTGATCTTGAGGAGAACATTAGAACCATTGCTTTTTGTGGGGACTGGGTTAAGCTGATGGATGATCGGTTGGTTGAGTTTTCCATTATACAAAGTGCCACATCTACTCAAGGAACAACTCAGAAACGTGCACCAAGTGGGAGACGTTATAAAAAGAGGTCATCTATTGATGAAGCTATAGATGATAGTTCCCAGGAAGGAATGTGGTGGCGTGGTGGCAAAGTTACCAAATTTATATTTCAGAATGTAGCTTTGCCGAAATCCATGATCAGAAAAGCAGCTCGCCAAGGTGGTTCGAGGAAAATTTCGGGTATTTCCTATGCCGATGGCTCTGAAATTCCCAAAAGAAGTAGACAGCTTGTTTGGAGAGTCGCAGTTCAAATGAGTAGAAATGCCTCGCAGCTGGCACTCCAGGTCAGATACCTAGATTCTAATCTTAGATGGAGTGATTTGATTCGTCCAGAGCAGAACATACAGGATGGGAAAGGTCAAGAAACTGAAGCTTCTGCTTTCCGAAATGCGAATATTTGTGATAAAAAACTTGTTGATGGAAAAATTTGTTATGGAATAGCTTTTGGGAGCCAAAAGCATCTTCCTAATAGGGTGATGAAAAGTGTTGTTGAAAAAGAGCAAATTTCAGAAGGAAAAGAAAAGTATTGGTTTTCTGAAACTAGAATTCCTTTATATCTGATAAAAGAGTATGAAGAAGGTAATGAAAAGGCTCCATGTGAAGAGCACTGTAGTGGTGCATCTCAGTTGAACAGAAGGCAGTTGAAAGGTACCTGCAAGGACATATTCTTTTACCTCTGTTGCAAGAGGGATAACTTGGAATTCTCGTGTTCTTCATGTCAGATGGGAATTTCAATTCGGAATGCTCACAAGTGTAATTCATGTCAAGGTTATTGTCATGAGGACTGTTCCATAAGTTCAGTTTCTATACTCTCTACAAATGGGGAACTTGAGCGCTTGACCACATGCAAACAATGTCACCATGCCAAGTTACTTGCTCCAAACATAATTAGTGATGAATCTCCAACCAGTCCTTTAATCTTACAAGGACAGGAAAACAGCTCTCGGATTATTTTCAAGGGACCAAGGCCAAAGGCTGATCATTCTGATACAAAACAAGTTAGTTCTGTGTCAGTTTCGAAAGGATCGAAGCGTAAATGTCCTGATCAAACTTTGAGTTCTACCAGGAAAAAAAAAGCTCATCCTGATACCAAACAAGCTACGTCTGATTTCAATTTGGTGGAATCAAGCAGCCGCCGCTACAATAATTGTTCTTGGGGTCTTATATGGAAAAAGAAAAGTAATGAAGAAAACACTGATTTTAGGATAAAAAACATACTTTTAAAAGGAGGATCAAACATGCCTGATCTATATCCTGTTTGTAACTTATGTACAAAGGCATATAGGGAAGACCTAATGTATATTCGCTGCGATACATGCCAAAATTGGTTTCATGCTGAAGCTGTTGAACTTGAAGAATCCAAAATTTCGACTTTGTTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAATCACCTGTGTGTCCGTACGCAGACCCAAAACCTAAGTCGGAAGTTAAGAAATCACGCCGAAGAGCTGCAAAGAAAGAACAGTCTGGAGCCAATTCTGATTCCGGAATATTCAATGATATCAGAGATTCTGAACCTGCTACTCCTGTCTTTCCTGTGGAGAGTGATCCATTACTTTTTGCTCTTGCAAATGTTGAGCTGATTACAGAATCTAATAAATTAGATTTGGATGTTCAGTGGAACTCTGTGCCAGGGCCGCAGAAATTGCCAGTTAGAAGGCATGTTAAGCATGAGGGGGATGATGATAGTTCTGTTGCAGGATTTACTTTACAGGCTGAATTTTCAACACACAGTGAAGCAGGTTATCTGTCCAATCCTGCAGAGTCGGAACTACCTTTAGAATACGATTCTGCTGTTTTTGACAGCAATCTGCCAAACAACAATGAGTTTGGAAATGATCAATCTTATGATGAGAAGAATCCCAATCTCTATTTCGATATAAATGAACTTCTATGCACAGATGAAGGCCAGATTGATGAAGGCCAGATTGATGGAGGTGATTTGTCTATGGATTTGTTGAAATATGATAATGAGAATTCTGGTGCCGCTGTTCCTGAAGAATTTGTGAATTCTGGTGCCGCTGGTCCTGAAGAATTTGAGAATTCTGGTGCCGCTGGTCCTGAAGAATTTGAAAATTCTGGTGCCGCTGGTCCTGAAGAATTTGAGAATTCTGGTGCCGCTGTTCCTGAAGAATTTGGAGAATTTGAAGATTTTGGAGAATTTGGAGATTTTGGAGAGAACATTTATTGCAGTATATGTTTACAAAATGGACCAGGTCTTGATCGTTTTTGTGAGACATGCGGGATTTTGTGTCACAGCACTTGTTTGCCTTGGCCTGAACCAGTTTTGGATGATGAAAAGTGGAAGTGTATGAATTGCCGGGATTGGCAATAA 5163 0.4141 MDKPSGRSRGRPKKRRMEDEKEGKTVADGKRQLLEAKPIALVGRYVLKEFPENGIYLGKVIYYDTGLYRVNYEDGDFEDLESGEIRPILIRDEDFDAGLAKRRTKLEKVVAKNSTKAAVADKVSGKSGEEESAAGVTPPSELNGELSIEIDKEEDDGADAEISSKSVPDVETAPLPPPLQLPLSSGTIGVPEQSVSHLFSVYGFLRSFSTQLFLHPFSLDEFVGCLNCQVNNTLFDAINFSLMRVLRRHLETLSSEGSELASQCLRCNDWSLLDTLTWSVFVSLYLVVKGYTKGPEWKGFYDEVFRSEYYLLPVSRKLMILQILCDDVLESEELKTEMNMRKESEVGMDYDAEDILPAEMGPRKVHPRYTRTSFCEDKEAIKLVSASNAVNQPSNSISYCRDTESTGDGDFDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVTKSFIPEGPWYCPECKINMTGPTIAKGTSLRGAEIFGKDLYGQLFMGTCDHLLVLNIGNNEVCLRYYNRKDIPKVVQLLYESTLHRPMYYGICMAVLQYWNISENFLPLPASTETNMKDETEFSAPLLSPPSEDNHSTTTASLLHNDMVPSLDGLQVSTQSPGLHSSGIVRSEEGLTVVNNIAAETRTEAIISAGLVSPQSDPNLQNSVNMSTTVDAAKFSLVKSQLSNCGHANDMGLPLNFSLLNKENTPVGFGKSESNANDDFCYFGFSYKPTSYINCYMHGDFSASAAAKFAMISSEESRSEGHASDSHKKTVSAYTYLQAKAFSLAASRFFWPSSEKKPVEVPRERCGWCFSCKANVASKRGCMLNHALISATKSAMKILAKFSPLRSGDGSLPSTIATYILYMEKCLHGLVVGPFINASYRNNWRKQVEQATTLGALKPLLLDLEENIRTIAFCGDWVKLMDDRLVEFSIIQSATSTQGTTQKRAPSGRRYKKRSSIDEAIDDSSQEGMWWRGGKVTKFIFQNVALPKSMIRKAARQGGSRKISGISYADGSEIPKRSRQLVWRVAVQMSRNASQLALQVRYLDSNLRWSDLIRPEQNIQDGKGQETEASAFRNANICDKKLVDGKICYGIAFGSQKHLPNRVMKSVVEKEQISEGKEKYWFSETRIPLYLIKEYEEGNEKAPCEEHCSGASQLNRRQLKGTCKDIFFYLCCKRDNLEFSCSSCQMGISIRNAHKCNSCQGYCHEDCSISSVSILSTNGELERLTTCKQCHHAKLLAPNIISDESPTSPLILQGQENSSRIIFKGPRPKADHSDTKQVSSVSVSKGSKRKCPDQTLSSTRKKKAHPDTKQATSDFNLVESSSRRYNNCSWGLIWKKKSNEENTDFRIKNILLKGGSNMPDLYPVCNLCTKAYREDLMYIRCDTCQNWFHAEAVELEESKISTLLGFKCCKCRRIKSPVCPYADPKPKSEVKKSRRRAAKKEQSGANSDSGIFNDIRDSEPATPVFPVESDPLLFALANVELITESNKLDLDVQWNSVPGPQKLPVRRHVKHEGDDDSSVAGFTLQAEFSTHSEAGYLSNPAESELPLEYDSAVFDSNLPNNNEFGNDQSYDEKNPNLYFDINELLCTDEGQIDEGQIDGGDLSMDLLKYDNENSGAAVPEEFVNSGAAGPEEFENSGAAGPEEFENSGAAGPEEFENSGAAVPEEFGEFEDFGEFGDFGENIYCSICLQNGPGLDRFCETCGILCHSTCLPWPEPVLDDEKWKCMNCRDWQ 1720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01500 1720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1349 1407 IPR013083 -
Trre7g01500 1720 Pfam DDT domain 194 249 IPR018501 -
Trre7g01500 1720 MobiDBLite consensus disorder prediction 926 947 - -
Trre7g01500 1720 SMART PHD_3 1169 1220 IPR001965 -
Trre7g01500 1720 SMART PHD_3 417 460 IPR001965 -
Trre7g01500 1720 SMART PHD_3 1353 1401 IPR001965 -
Trre7g01500 1720 SMART PHD_3 1672 1717 IPR001965 -
Trre7g01500 1720 MobiDBLite consensus disorder prediction 1 29 - -
Trre7g01500 1720 MobiDBLite consensus disorder prediction 1251 1302 - -
Trre7g01500 1720 MobiDBLite consensus disorder prediction 1413 1443 - -
Trre7g01500 1720 MobiDBLite consensus disorder prediction 120 178 - -
Trre7g01500 1720 SUPERFAMILY FYVE/PHD zinc finger 1348 1408 IPR011011 -
Trre7g01500 1720 MobiDBLite consensus disorder prediction 1264 1282 - -
Trre7g01500 1720 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 296 339 IPR028942 -
Trre7g01500 1720 CDD PHD_SF 1672 1716 - -
Trre7g01500 1720 MobiDBLite consensus disorder prediction 1414 1431 - -
Trre7g01500 1720 Pfam PHD-finger 418 460 IPR019787 -
Trre7g01500 1720 CDD Tudor_AtPTM-like 42 90 IPR047365 -
Trre7g01500 1720 PANTHER PHD FINGER FAMILY PROTEIN 35 1406 - -
Trre7g01500 1720 ProSitePatterns Zinc finger PHD-type signature. 418 459 IPR019786 -
Trre7g01500 1720 MobiDBLite consensus disorder prediction 1615 1645 - -
Trre7g01500 1720 CDD PHD2_CHD_II 418 459 - -
Trre7g01500 1720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 409 464 IPR013083 -
Trre7g01500 1720 SUPERFAMILY FYVE/PHD zinc finger 1663 1717 IPR011011 -
Trre7g01500 1720 ProSiteProfiles DDT domain profile. 192 252 IPR018501 -
Trre7g01500 1720 SMART testlast3 192 252 IPR018501 -
Trre7g01500 1720 SUPERFAMILY FYVE/PHD zinc finger 406 465 IPR011011 -
Trre7g01500 1720 ProSiteProfiles Zinc finger PHD-type profile. 415 462 IPR019787 -
Trre7g01500 1720 MobiDBLite consensus disorder prediction 1283 1298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01500 Trre-Chr7 11192082 11199637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01500 285 621 EF-hand Containing Proteins AT5G22760 43.429 3.34e-77 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Trre7g01500 DDT 2.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01500 - - tpra:123920021 2920.57