Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01499 ATGGATAAATCTAAAGGGAGATCGAGAGGTTTTCCTAAGAAATGGAGAAAGGAGGATGAAAAGGAAGGGAAAAAAGTTGTTGATGCCAAAAGGCAACCGTTGGAGGCCAAACCAATAAAATTGGTTGGCAGGTATGTGCTGAAGGAGTTTCCGAAAAATGGGATTTTTCTGGGTAAAGTTGTCTACTATGACACTGATTTATGTATGATGAATTACGAAGATGGGGATTTTGAAGACTTGGAAAGCGGTGAAATCCGTCCAATACTTATCAGGGACGAGGGTTTTGATGCTAGTTTAGTGAAGAGGAGGACTAAGCTGGAGAAAGTAGTGGCCAAGAATAGTGTCAAGGGCGCAGATGTGGCTGAGAAGGTTTCAGGGAAATCTGATAAGGAGGAATCTGCTGCCGGTGTGACTGCCCCAAATGAATTGAATGGGGAATTATCGATGGAAATCGATAAGGAGGAAGATGATGGAGCAGATGCTGAAACTTCAAGTGAGTTTGTTCCTGATGTTGAGACATCACCTTTGCCGCCACTGTTGCAATTGTCGTTGTCATCGGGAACTATTGGTGTGCCTGAGCAGAGCGTCTCCCATCTTTTTTCTGTTTTTGGATTCTTAAGATCCTTCAGCACACAGTTGTTTCTTCATTCTTTTTGTTTGGACGAGTTTGTTGGTTGTTTGAATTGTCATGTCTCCAATACGTTGTTTGATGCTATTCACTTTTCTTTAATGCGGGTGTTAAGGCGTCATCTTGAAACACTATGA 765 0.4222 MDKSKGRSRGFPKKWRKEDEKEGKKVVDAKRQPLEAKPIKLVGRYVLKEFPKNGIFLGKVVYYDTDLCMMNYEDGDFEDLESGEIRPILIRDEGFDASLVKRRTKLEKVVAKNSVKGADVAEKVSGKSDKEESAAGVTAPNELNGELSMEIDKEEDDGADAETSSEFVPDVETSPLPPLLQLSLSSGTIGVPEQSVSHLFSVFGFLRSFSTQLFLHSFCLDEFVGCLNCHVSNTLFDAIHFSLMRVLRRHLETL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01499 254 ProSiteProfiles DDT domain profile. 193 253 IPR018501 -
Trre7g01499 254 SMART testlast3 193 253 IPR018501 -
Trre7g01499 254 MobiDBLite consensus disorder prediction 1 29 - -
Trre7g01499 254 MobiDBLite consensus disorder prediction 149 163 - -
Trre7g01499 254 MobiDBLite consensus disorder prediction 121 173 - -
Trre7g01499 254 Pfam DDT domain 195 250 IPR018501 -
Trre7g01499 254 PANTHER PHD FINGER FAMILY PROTEIN 35 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01499 Trre-Chr7 11190042 11190806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01499 29 254 PHD Transcription Factor Family AT5G35210 42.553 6.87e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Trre7g01499 DDT 8.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01499 - - tpra:123920021 347.051