Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01497 ATGTCATTGAGAGCGGCGATAGAGATTGCGTTTTCTAGAAAAATCGATAGCATAGACGACACCATTTCTAGTGAATCTGTCGATTCAACAGCTTTGGAACCCCATGTGATGACTGTTAATCCTGGAGAGGACGTTGTTGCAAAGATACATGCATTTCTTGAAAACGATCCTCTTGCTGCTGTTTATATACTATGTGCTGTTGGCAGTGTATCAAGTGTTGTCCTTCAGCAACCTGGTATTTTTTGTGGTTTATTAAAATTTGAGGGTTTGTTCGAGATTTTATCATTAAGACCATGGAACTTCACTAGTGGTGGTGCTGGTGCACGAAGCCAAATGTGCAAGTTGAGTGTTTCATTAGCTAGACCTGATTTTAGTGTTTTTGGTGCACCTATTGTGAACTCAATGATAGCTGCTACTCCTATCCTACTTGGTTTGGCAATTTACAAGCAAAACACAAGCAACCAAACCATGGGAAATTCCTCATTTTCAACTGCTCAAAACAAGCTCAATTAG 513 0.3996 MSLRAAIEIAFSRKIDSIDDTISSESVDSTALEPHVMTVNPGEDVVAKIHAFLENDPLAAVYILCAVGSVSSVVLQQPGIFCGLLKFEGLFEILSLRPWNFTSGGAGARSQMCKLSVSLARPDFSVFGAPIVNSMIAATPILLGLAIYKQNTSNQTMGNSSFSTAQNKLN 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01497 170 ProSiteProfiles PPC domain profile profile. 29 170 IPR005175 -
Trre7g01497 170 Pfam Plants and Prokaryotes Conserved (PCC) domain 34 142 IPR005175 -
Trre7g01497 170 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 153 IPR039605 GO:0003680
Trre7g01497 170 SUPERFAMILY AF0104/ALDC/Ptd012-like 31 155 - -
Trre7g01497 170 CDD DUF296 34 128 IPR005175 -
Trre7g01497 170 Gene3D - 34 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01497 Trre-Chr7 11177355 11182085 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01497 34 155 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 40.164 7.53e-21 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01497 - - mtr:25492323 128.257