Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01496 ATGGAAGATCAAAACCTGAACCTACCTGCTGCAATGTCCCCAACTTCAACCCAAGATGGGTCAGAAACCAACAACAACGTCCCTGTTGCAACTGAAGTTGCTACAATTGTTGATGTTGGCTCTGACACCGGAGCAAAGTCCGGACCTGCTGCAGGTTCGAACTTTCCTCCCGTGAAAAGGGGACGAGGAAGACCTAGGAAGCATGAGGTACGTGTGAACCAGCCGGCTCTGGTACCAGTGACACCGGCACCAGAGCTTGCTATTCAGCCAATTGGAAGTGGGGAGAAGCGTGGAAGGGGACGTCCTCGTGGTTCTGGAAAACTTCAGATGTTGGCTTCCATTGGTGGATGTGTGGCTGAAACAGCTGGAGGAAATTTCACACCTCATATGCTGACTGTTAGCCCGGGAGAGGACGTAGTTGCAAGGATATTTGCATTTTTTCGAAATGCTCCTAAAGTTGCTTCTTGTGTAATCTCTGCTGCTGGCACTGTATCAAGTGTCATCCTTCGCCAACCTAATTCTGGTGTTTTTGTAAGACATGAGGGACACTTTGAAATTTTATCATTGAGGGGATCATGCACTTTCACTAGTGCTGCTGTTGCTGGTGGTGCACATAGAAAAATTAGCATGTTGAGTGTTTCATTGGCTAAATCTGATGGAACAATTTTTGGAGGTTCTATTGAGAACTCAATGATTGCTGCTACTCCTATTCCGCTGATTATGGCAACTTTCATTCAAAGCATAAGCCAACAAATCAAGAGGAAATACTCATCTCCTTCTTCAACTGCTCCAAACATGCTGCCAAACTCGAAAGTTCCCAAGTTAACTCTAGAACAAGGAGAACCTAGCTGCCAAACAGGAAATGCAACTGCAAATTCTAATGGTGTAGCTGTAGCTGTAGCAGATATCAATGTGACATTAGCTGAAGCAACTAATGCTGTGTCTGTGTCTGAAAATGTCACTACTATTGCTGATGAAAATGCTCATTCCGATTCCGTTGGTGGTGGTGGTGGTGGTGGTGCTGGTTTTGACCTTGAGAGCCAGGTGCCTGAATCAGACAATAAAACCTCTCCTTAA 1077 0.4559 MEDQNLNLPAAMSPTSTQDGSETNNNVPVATEVATIVDVGSDTGAKSGPAAGSNFPPVKRGRGRPRKHEVRVNQPALVPVTPAPELAIQPIGSGEKRGRGRPRGSGKLQMLASIGGCVAETAGGNFTPHMLTVSPGEDVVARIFAFFRNAPKVASCVISAAGTVSSVILRQPNSGVFVRHEGHFEILSLRGSCTFTSAAVAGGAHRKISMLSVSLAKSDGTIFGGSIENSMIAATPIPLIMATFIQSISQQIKRKYSSPSSTAPNMLPNSKVPKLTLEQGEPSCQTGNATANSNGVAVAVADINVTLAEATNAVSVSENVTTIADENAHSDSVGGGGGGGAGFDLESQVPESDNKTSP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01496 358 SMART AT_hook_2 96 108 IPR017956 GO:0003677
Trre7g01496 358 SMART AT_hook_2 59 71 IPR017956 GO:0003677
Trre7g01496 358 MobiDBLite consensus disorder prediction 1 31 - -
Trre7g01496 358 Gene3D - 128 264 - -
Trre7g01496 358 MobiDBLite consensus disorder prediction 1 70 - -
Trre7g01496 358 Pfam Plants and Prokaryotes Conserved (PCC) domain 128 245 IPR005175 -
Trre7g01496 358 ProSiteProfiles PPC domain profile profile. 123 269 IPR005175 -
Trre7g01496 358 MobiDBLite consensus disorder prediction 84 106 - -
Trre7g01496 358 SUPERFAMILY AF0104/ALDC/Ptd012-like 125 251 - -
Trre7g01496 358 PRINTS AT-hook-like domain signature 59 69 IPR017956 GO:0003677
Trre7g01496 358 PRINTS AT-hook-like domain signature 94 104 IPR017956 GO:0003677
Trre7g01496 358 MobiDBLite consensus disorder prediction 325 358 - -
Trre7g01496 358 CDD DUF296 127 244 IPR005175 -
Trre7g01496 358 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 292 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01496 Trre-Chr7 11141612 11145781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01496 9 254 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 37.402 7.22e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01496 - - mtr:25492323 356.681