Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01472 ATGACGACGGAGAACACCGTAACTGTAAACCCTAGCCATGGACAACGGCCAAAAGTGGTGGTTATAACAGGCCCCACCGGTTCTGGAAAATCAAAGCTAGCCGTTGATTTGGCCTCACACTTCCCATTCGAAGTAATCAACGCCGATTCCATGCAAGTTTACAGTGGACTCGATATTCTCACCAACAAAATCCCCTTCTCTGAACAAAACGGAGTGCCGCATCATCTATTGGGAACTGTAAACCCTAATTTTGAATTCACTGCCAAAGCTTTTCGTGATTCTGCTATTCCCATCATTGATGCTATATTGCTTAGGAACAACATACCTGTTATTGTTGGTGGTACTAATTACTATATACAGGCTCTTGTGAGTTCGTTTCTGTTAGATGATTCAACAGATGATTTGAATGAAAGCTACTTGGGTGACTCACCTGGTATCACAGGGTATGATAATGATTTGTGTTCTGAAAATGATAGTTCAAGCAACAGTTATGATTTTCTTAAAGATATTGATCCAGTTGCAGCGAATAGAATTCATCCAAATAACCATAGAAAGATAAATCAATACATTAGTCTGTACTCTCGAACCGGTGTTCTTCCCAGCAAAGTTTTTCAAGGACAGGCAGCAGAGAAGTGGGGTCAAGCTGATAACTTAAGATATGATTGTTGTTTTATAAGTGTGGACGCGTCTCTGCCGGTACTGGACAGATATGTAGAGCAGAGGGTAGATGATATGATGGATGCAGGATTACTCAATGAAGTCTACGACATTTATACTATGAATGCAGATTATACCAGAGGTTTGCGACAGGCCATTGGTGTCCGTGAATTTGAGGATCTTCTACGAACTAGTGTTTTCAAAAACATAAATAAAAAAGAGGTGGAATTAATTGACAGATCAAACTTAGAAAATACCGAGCCATTGTTTCATGGAAATTTGATGGAGTGGTTGAGATCTTCCTCTGATACTAAATCCACAACTCTTTTGGAAGAAGCAATTGAGAAAGTAAAGGTTAATACCAGGAGACTTGTCCGCCGTCAGAAGAGGATGCTCAGTCGACTTCAAACATTGTTTGGTTGGGACATACACTATGTTGATTCCACAGAATCAATATCGAGCAGATCAAATGATGTATGGATTAGCCAAGTGGTTGAACCTGCCACGAAGATAGTGACATCTTTCCTAAGTGAGAATGGTAGCTTGTCGGCGTCAAATGGCAATGGAACAAAAATAATCCAAAGGGACCTCTGGACTCAATACACATGCAAGGCCTGCAATGACCGGGTTCTTAGAGGATTACATGAATGGGAACAACACATACGTGGGCGTGGGCATCGTAAACGTATTTCTAGTCTCAAGAGCAAGGCAAAAGGTTTCAGTTTTGTGGAACATAAGCAAGCATGA 1404 0.4095 MTTENTVTVNPSHGQRPKVVVITGPTGSGKSKLAVDLASHFPFEVINADSMQVYSGLDILTNKIPFSEQNGVPHHLLGTVNPNFEFTAKAFRDSAIPIIDAILLRNNIPVIVGGTNYYIQALVSSFLLDDSTDDLNESYLGDSPGITGYDNDLCSENDSSSNSYDFLKDIDPVAANRIHPNNHRKINQYISLYSRTGVLPSKVFQGQAAEKWGQADNLRYDCCFISVDASLPVLDRYVEQRVDDMMDAGLLNEVYDIYTMNADYTRGLRQAIGVREFEDLLRTSVFKNINKKEVELIDRSNLENTEPLFHGNLMEWLRSSSDTKSTTLLEEAIEKVKVNTRRLVRRQKRMLSRLQTLFGWDIHYVDSTESISSRSNDVWISQVVEPATKIVTSFLSENGSLSASNGNGTKIIQRDLWTQYTCKACNDRVLRGLHEWEQHIRGRGHRKRISSLKSKAKGFSFVEHKQA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01472 467 Hamap tRNA dimethylallyltransferase [miaA]. 19 373 IPR018022 GO:0008033
Trre7g01472 467 Gene3D - 17 415 IPR027417 -
Trre7g01472 467 Gene3D - 151 208 - -
Trre7g01472 467 FunFam tRNA dimethylallyltransferase 415 458 - -
Trre7g01472 467 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 395 IPR039657 -
Trre7g01472 467 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 19 283 IPR018022 GO:0008033
Trre7g01472 467 Gene3D Classic Zinc Finger 416 460 - -
Trre7g01472 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 260 IPR027417 -
Trre7g01472 467 FunFam LD10347p 151 208 - -
Trre7g01472 467 Pfam IPP transferase 52 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01472 Trre-Chr7 10886576 10891149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01472 22 454 C2H2 Transcription Factor Family AT2G27760 57.208 1.81e-172 491