Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01470 ATGGCTTCATCAACTGTCACAGGCACAAACAAACCATTCTCAGTTCTCTTTGTCTGCCTTGGCAACATCTGTAGAAGTCCAGCTGCTGAAGGGGTTTTCACTGATTTGGTTAAGAAAAGTGGTTTTGATTCTAAGTTCAGAATTGATTCTGCTGGTACAATCAATTATCATGAAGGTAATCAAGCTGATTCAAGAATGAGGGCAGCTTCAAAAAGACGTGGGATTGAGATAACTTCAATTTCAAGGCCAATTAAGTCATCTGATTTTGTTGAGTTTGATCTTATTCTTGCTATGGACAAGCAAAATAGAGAGGACATATTGGAAGCTTTTAATAGATGGAAGTTTAGAGATCCTTTACCTGAAGATGCCCACAAAAAGGTTAAGTTGATGTGCTCATATTGTAAGAAACATGATGAAACTGAAGTCCCGGATCCTTACTATGGTGGACCTCAAGGTTTTGAAAAGGTGTTAGATATGCTTGAAGATGCTTGTGAATCATTGCTGGAAAACATTTTGGCCGAAAATAAACATATACAAGAATCCTAA 546 0.3755 MASSTVTGTNKPFSVLFVCLGNICRSPAAEGVFTDLVKKSGFDSKFRIDSAGTINYHEGNQADSRMRAASKRRGIEITSISRPIKSSDFVEFDLILAMDKQNREDILEAFNRWKFRDPLPEDAHKKVKLMCSYCKKHDETEVPDPYYGGPQGFEKVLDMLEDACESLLENILAENKHIQES 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01470 181 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 4 176 - -
Trre7g01470 181 Pfam Low molecular weight phosphotyrosine protein phosphatase 15 168 IPR023485 -
Trre7g01470 181 PRINTS LMW phosphotyrosine protein phosphatase signature 15 32 IPR017867 GO:0004725|GO:0006470
Trre7g01470 181 PRINTS LMW phosphotyrosine protein phosphatase signature 142 157 IPR017867 GO:0004725|GO:0006470
Trre7g01470 181 PRINTS LMW phosphotyrosine protein phosphatase signature 58 74 IPR017867 GO:0004725|GO:0006470
Trre7g01470 181 SUPERFAMILY Phosphotyrosine protein phosphatases I 11 171 IPR036196 -
Trre7g01470 181 CDD LMWPTP 14 169 - -
Trre7g01470 181 SMART LMWPc_2 13 170 IPR023485 -
Trre7g01470 181 FunFam Low molecular weight protein-tyrosine-phosphatase 12 176 - -
Trre7g01470 181 Gene3D - 9 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01470 Trre-Chr7 10874651 10876645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01470 5 175 Protein tyrosine phosphatase (PTP) family AT3G44620 67.010 4.84e-90 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01470 K25307 - qsu:111996756 319.316