Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01469 ATGAAGACACTATACATTAATGGAACAAACCTTATTAATTTACCATTTTGCCACTCTTCCCACTTCCTCTCTCAAAACCCAAATGTCTCATTCCTTATTCCTTTTCCTTCCAAACAGATTCCAAAGCTAACTTCAAAACCTTATTCCATTTCCTTAAAAAAATCTCAATTTTCTCCAATTCAAGCTTCAATGGCTTCATCAACTGTCACAGGCACAAACAAACCATTCTCAGTTCTCTTTGTCTGCCTTGGCAACATCTGTAGAAGTCCAGCTGCTGAAGGGGTTTTCACTGATTTGGTTAAGAAAAGTGGTTTTGATTCTAAGTTCAGAATTGATTCTGCTGGTACAATCAATTATCATGAAGGTAATCAAGCTGATTCAAGAATGAGGGCAGCTTCAAAAAGACGTGGGATTGAGATAACTTCAATTTCAAGGCCAATTAAGTCATCTGATTTTGTTGAGTTTGATCTTATTCTTGCTATGGACAAGCAAAATAGAGAGGACATATTGGAAGCTTTTAATAGATGGAAGTTTAGAGATCCTTTACCTGAAGATGCCCACAAAAAGGTTAAGTTGATGTGCTCATATTGTAAGAAACATGATGAAACTGAAGTCCCGGATCCTTACTATGGTGGACCTCAAGGTTTTGAAAAGGTGTTAGATATGCTTGAAGATGCTTGTGAATCATTGCTGGAAAACATTTTGGCCGAAAATAAACATATACAAGAATCCTAA 735 0.3646 MKTLYINGTNLINLPFCHSSHFLSQNPNVSFLIPFPSKQIPKLTSKPYSISLKKSQFSPIQASMASSTVTGTNKPFSVLFVCLGNICRSPAAEGVFTDLVKKSGFDSKFRIDSAGTINYHEGNQADSRMRAASKRRGIEITSISRPIKSSDFVEFDLILAMDKQNREDILEAFNRWKFRDPLPEDAHKKVKLMCSYCKKHDETEVPDPYYGGPQGFEKVLDMLEDACESLLENILAENKHIQES 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01469 244 CDD LMWPTP 77 232 - -
Trre7g01469 244 Gene3D - 60 239 - -
Trre7g01469 244 Pfam Low molecular weight phosphotyrosine protein phosphatase 78 231 IPR023485 -
Trre7g01469 244 FunFam Low molecular weight protein-tyrosine-phosphatase 75 239 - -
Trre7g01469 244 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 11 239 - -
Trre7g01469 244 SMART LMWPc_2 76 233 IPR023485 -
Trre7g01469 244 PRINTS LMW phosphotyrosine protein phosphatase signature 121 137 IPR017867 GO:0004725|GO:0006470
Trre7g01469 244 PRINTS LMW phosphotyrosine protein phosphatase signature 78 95 IPR017867 GO:0004725|GO:0006470
Trre7g01469 244 PRINTS LMW phosphotyrosine protein phosphatase signature 205 220 IPR017867 GO:0004725|GO:0006470
Trre7g01469 244 SUPERFAMILY Phosphotyrosine protein phosphatases I 74 234 IPR036196 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01469 Trre-Chr7 10874462 10876645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01469 14 238 Protein tyrosine phosphatase (PTP) family AT3G44620 58.527 1.65e-92 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01469 K25307 - qsu:111996756 345.51